Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g00935 ATGGACTTAAATGCCTCGCCGGTGCCTGAAGAGGACGAAGAGACGTTTGATAGACATGAAGTGGCGTATAGTGCTCCAGAGGATCATATAGAGACTGGTGCCAGTATTGCACGGCGGGAACGAGAAGAAAGAAAAAGGCGGCTGAAAAGAGATCGCTCTATTGAGAGACCGGTGCATGAATACCAACAGCCGGCACGGGATCAGTCTTACCCTGCTAAAAACCAAAAAACTGTTAGAAGCAGGCTTCCTCCAGGTTGGTTGGATTGCCCTGCTTTTGGTCAAGAAATATGTTGCATGATTCCTTCCAAAGTTCCTCTGGGCGACACCTTCAGTGATTGTGTAGCACCTGGTAAAAGATATGCATTTAAGCAAGCGATCCATCAGCAGAGAGTTTGGGGGAGAAAACTCGGTTTGGTGATTGATTTGACAAATTCTTATCGTTATTATACAACGACAGATTTGAATAAAGAGGGTATCAAGTATGTTAAGATTCCTTGCAAGGGGAGGGATTCTGTACCTGACAACAAGTCGGTCAATATGTTCGTTTACGAGGTCAGTCAGTTTATTTCTCGTCAGAAACACTCAAAGAAGTATATTCTTGTCCATTGCACGCATGGCCATAATCGCACTGGATATATGATCATAAATTATCTTGCGCGTGCACTATCCATTTCTGTTACCCAGGCTCTTAAAATGTTTTCCGATGCACGTCCTCCTGGAATTTACAAGCCAGATTACATTGATGCATTATATGCCTTCTATCATGAAAAAAAACCTGAATTGGTTGTTTACCCACCCACACCTGAGTGGAAGAGATCCTCAGATCTTGATCTTAATGGTGAAGCAGTTCCGGATGATGACGATGATGGAGGTTCTGCTGCTCCTTTGAATGAAAATCATGATGATGCTGCTCAAGTGATGACAAATGATGATATATTGGGTGATGAGATACCTGAGGACCAAGAACGTGCTTTTAAACACTTCTGCTATCAAATGCTTAAAATGAATGCGGGAGCAAGAGCGAATTTGCAATTTCCTGGGTCGCATCCTGTGTCTCTTAACAGAGAGAATCTTCAACTGCTAAGGCAACGCTATTATTATGCCACGTGGAAAGCTGATGGAACAAGATATATGATGCTAATAACCATGGATGGATGCTACTTGATTGACAGGGGTTTTAAATTTAGAAGAGTCCAAATGAGATTTCCGTACAGAAATGCAAATGATGGCCTAGTTGAGAAGATTCACAACTACACACTCCTTGATGGAGAAATGATCATTGACACTCTGCCGGACTCACAGAAGCAAGAGAGAAGATATCTTATATATGATATGATGGCAATTAATCATGTTTCAGTCACTGAGCGTCCTTTCTATGAACGGTGGAAGATGCTTGAGAAAGAAGTGATCGAACCTCGTAATTACGAGCGCCAGAATATTTACCAGAGTAGGAACCCTCAGTATAGATATGACCTAGAGCCATTCAGGGTGAGGAGGAAAGACTTTTGGTTGCTCTCCACAGTTACCAAACTTTTGAAGGAGTTCATACCGAGGCTTTCACATGATGCCGATGGTCTAATATTTCAGATGGGGGACGATGATTCTCAGACGCTTATTTTGTTCGAACGAGGAAAGAGGAAAACAATGGAAGGAAATAGGGTTAAGTTCAAAGATGGCGATCCCTCCTTCTATTCAGGAAAGATTGTTGAGTGCTCTTGGGATTCTGATGAACGAGTATGGGTCTGCATGCGTATCAGGACAGACAAAACAACTCCTAATGATTTCAATACATATAGAAAGGTTATGCGGAGCATTAAAGACAACATCACGGAGGAGGATTTGTTGAAGGAAATTCATGAGATCATACGCTTGCCTATGTATGCTGATAGGATAAGGAATGATAGTAAAGCAGCCCAACATACGAATTCAACACGACGGAGGTGA 1944 42.34 MDLNASPVPEEDEETFDRHEVAYSAPEDHIETGASIARREREERKRRLKRDRSIERPVHEYQQPARDQSYPAKNQKTVRSRLPPGWLDCPAFGQEICCMIPSKVPLGDTFSDCVAPGKRYAFKQAIHQQRVWGRKLGLVIDLTNSYRYYTTTDLNKEGIKYVKIPCKGRDSVPDNKSVNMFVYEVSQFISRQKHSKKYILVHCTHGHNRTGYMIINYLARALSISVTQALKMFSDARPPGIYKPDYIDALYAFYHEKKPELVVYPPTPEWKRSSDLDLNGEAVPDDDDDGGSAAPLNENHDDAAQVMTNDDILGDEIPEDQERAFKHFCYQMLKMNAGARANLQFPGSHPVSLNRENLQLLRQRYYYATWKADGTRYMMLITMDGCYLIDRGFKFRRVQMRFPYRNANDGLVEKIHNYTLLDGEMIIDTLPDSQKQERRYLIYDMMAINHVSVTERPFYERWKMLEKEVIEPRNYERQNIYQSRNPQYRYDLEPFRVRRKDFWLLSTVTKLLKEFIPRLSHDADGLIFQMGDDDSQTLILFERGKRKTMEGNRVKFKDGDPSFYSGKIVECSWDSDERVWVCMRIRTDKTTPNDFNTYRKVMRSIKDNITEEDLLKEIHEIIRLPMYADRIRNDSKAAQHTNSTRRR 647
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5221979 5233292 + Cp4.1LG10g08270.1 Cpe10g00935 476472

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g00935 647 PANTHER MRNA (GUANINE-N(7)-)-METHYLTRANSFERASE-RELATED 532 647 - -
Cpe10g00935 647 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 82 270 IPR029021 -
Cpe10g00935 647 CDD Adenylation_mRNA_capping 342 529 IPR001339 GO:0004484|GO:0005524|GO:0006370
Cpe10g00935 647 MobiDBLite consensus disorder prediction 11 62 - -
Cpe10g00935 647 Gene3D DNA ligase/mRNA capping enzyme 302 536 - -
Cpe10g00935 647 PIRSF mRNA_capping_HCE 531 647 IPR017074 GO:0004484|GO:0006370|GO:0140818
Cpe10g00935 647 PIRSF mRNA_capping_HCE 69 537 IPR017074 GO:0004484|GO:0006370|GO:0140818
Cpe10g00935 647 PANTHER MRNA-CAPPING ENZYME 1 533 - -
Cpe10g00935 647 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 179 248 IPR000387 GO:0016311|GO:0016791
Cpe10g00935 647 PANTHER MRNA-CAPPING ENZYME 532 647 - -
Cpe10g00935 647 CDD RNA_5'-triphosphatase 85 251 - -
Cpe10g00935 647 SMART dsp_5 116 256 IPR020422 GO:0006470|GO:0008138
Cpe10g00935 647 PANTHER MRNA (GUANINE-N(7)-)-METHYLTRANSFERASE-RELATED 1 533 - -
Cpe10g00935 647 MobiDBLite consensus disorder prediction 1 75 - -
Cpe10g00935 647 ProSiteProfiles Dual specificity protein phosphatase domain profile. 109 260 IPR020422 GO:0006470|GO:0008138
Cpe10g00935 647 Gene3D - 547 624 IPR012340 -
Cpe10g00935 647 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 309 530 - -
Cpe10g00935 647 ProSitePatterns Tyrosine specific protein phosphatases active site. 201 211 IPR016130 GO:0016311|GO:0016791
Cpe10g00935 647 Pfam Dual specificity phosphatase, catalytic domain 134 254 IPR000340 GO:0008138|GO:0016311
Cpe10g00935 647 MobiDBLite consensus disorder prediction 274 301 - -
Cpe10g00935 647 Pfam mRNA capping enzyme, catalytic domain 349 533 IPR001339 GO:0004484|GO:0005524|GO:0006370
Cpe10g00935 647 Pfam mRNA capping enzyme, C-terminal domain 546 615 IPR013846 -
Cpe10g00935 647 SUPERFAMILY Nucleic acid-binding proteins 540 632 IPR012340 -
Cpe10g00935 647 Gene3D Protein tyrosine phosphatase superfamily 78 291 IPR029021 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g00935 K13917 RNGTT; mRNA-capping enzyme [EC:2.7.7.50 3.6.1.74] - csv:101209960 1171.76
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe10g00935 Cpe19g00296 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00935 Cpe-Chr10:5221979 Cpe19g00296 Cpe-Chr19:2569420 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g852 . . . . . Bpe03g01015 . Bma10g00319 . . Cma03g00375 . Car03g00328 Car07g01025 Sed14g0660 Cpe10g00935 . Bhi03g02108 Tan03g0830 Cmetu08g1543 . Hepe04g0778 . . Cla04g00726 Cam04g0737 Cec04g0863 Cco04g0913 Clacu04g0781 Cmu04g0770 Cre04g0825 . . . . . Csa04g01589 Chy08g00661 . Blo07g01154 . . Bda05g00942 . . . . . Cmo03g00384 . . . . . . Cpe19g00296 . . . . . . . . . . . . . . . . . Cme08g02497
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe04g00296 CST 6 612 Protein tyrosine phosphatase (PTP) family AT3G50110 56.6 2.2e-181 632.9
Cpe19g00640 . 33 650 Protein tyrosine phosphatase (PTP) family AT3G50110 55.6 3.4e-174 609.0
Cpe15g00475 CST 42 388 Protein tyrosine phosphatase (PTP) family AT3G50110 65.0 9.1e-135 478.0
Cpe04g00171 CCT 1 411 Protein tyrosine phosphatase (PTP) family AT5G39400 65.9 1.9e-157 552.7
Cpe03g00496 CCT 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 64.0 1.4e-152 536.6
Cpe13g00776 . 1 848 Protein tyrosine phosphatase (PTP) family AT3G10550 66.2 0.0e+00 1121.7
Cpe13g00776 . 1 848 Protein tyrosine phosphatase (PTP) family AT5G04540 62.6 4.8e-309 1057.4
Cpe18g00562 . 1 1191 Protein tyrosine phosphatase (PTP) family AT5G58160 55.3 0.0e+00 1094.0
Cpe04g01248 . 1 1233 Protein tyrosine phosphatase (PTP) family AT5G58160 54.6 0.0e+00 1078.5
Cpe02g00327 CCT 1 1361 Protein tyrosine phosphatase (PTP) family AT5G58160 51.6 7.8e-295 1010.7
Cpe06g00297 CCT 15 1312 Protein tyrosine phosphatase (PTP) family AT5G58160 50.3 4.4e-290 995.0
Cpe06g00927 . 82 372 Protein tyrosine phosphatase (PTP) family AT1G71860 65.2 4.9e-111 398.3
Cpe18g00937 . 13 910 Protein tyrosine phosphatase (PTP) family AT5G23720 56.8 1.7e-278 956.1
Cpe17g00126 . 60 198 Protein tyrosine phosphatase (PTP) family AT3G06110 54.3 2.9e-40 162.2
Cpe15g00859 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 76.9 5.8e-71 264.2
Cpe01g01265 . 104 384 Protein tyrosine phosphatase (PTP) family AT3G52180 70.8 5.6e-116 414.5
Cpe09g00392 . 111 391 Protein tyrosine phosphatase (PTP) family AT3G52180 66.9 7.8e-110 394.0
Cpe01g00998 . 533 749 Protein tyrosine phosphatase (PTP) family AT3G10940 77.6 1.8e-103 372.9
Cpe04g00550 . 143 585 Protein tyrosine phosphatase (PTP) family AT3G01510 71.0 2.0e-197 685.6
Cpe05g01529 . 9 215 Protein tyrosine phosphatase (PTP) family AT2G32960 57.3 2.4e-73 272.7
Cpe04g00827 . 45 211 Protein tyrosine phosphatase (PTP) family AT2G32960 62.9 2.3e-68 256.1
Cpe16g00749 . 43 228 Protein tyrosine phosphatase (PTP) family AT2G32960 59.7 5.1e-68 255.0
Cpe08g00726 . 1 333 Protein tyrosine phosphatase (PTP) family AT2G35680 55.8 2.3e-100 362.8
Cpe14g00928 . 1 333 Protein tyrosine phosphatase (PTP) family AT2G35680 54.5 5.8e-96 348.2
Cpe07g01040 CST 17 195 Protein tyrosine phosphatase (PTP) family AT2G35680 72.1 2.1e-74 276.6
Cpe11g01148 CST 22 257 Protein tyrosine phosphatase (PTP) family AT2G35680 54.8 6.2e-74 275.0
Cpe11g01158 . 22 257 Protein tyrosine phosphatase (PTP) family AT2G35680 54.8 6.2e-74 275.0
Cpe14g00928 . 37 212 Protein tyrosine phosphatase (PTP) family AT5G56610 51.7 2.2e-44 176.0
Cpe07g01040 CST 27 198 Protein tyrosine phosphatase (PTP) family AT5G56610 52.9 4.1e-43 171.8
Cpe08g00726 . 37 209 Protein tyrosine phosphatase (PTP) family AT5G56610 50.3 4.1e-43 171.8
Cpe05g01529 . 49 215 Protein tyrosine phosphatase (PTP) family AT4G03960 76.0 6.7e-76 280.8
Cpe16g00749 . 40 229 Protein tyrosine phosphatase (PTP) family AT4G03960 68.4 9.0e-73 270.4
Cpe04g00827 . 42 211 Protein tyrosine phosphatase (PTP) family AT4G03960 72.4 5.9e-72 267.7
Cpe18g00256 . 15 170 Protein tyrosine phosphatase (PTP) family AT4G03960 59.6 1.5e-54 209.9
Cpe18g00256 . 1 196 Protein tyrosine phosphatase (PTP) family AT3G02800 68.4 3.6e-77 285.0
Cpe05g01529 . 43 209 Protein tyrosine phosphatase (PTP) family AT3G02800 62.3 3.2e-57 218.8
Cpe04g00827 . 40 200 Protein tyrosine phosphatase (PTP) family AT3G02800 56.5 3.7e-53 205.3
Cpe16g00749 . 37 219 Protein tyrosine phosphatase (PTP) family AT3G02800 54.6 9.0e-52 200.7
Cpe01g01110 CCT 11 196 Protein tyrosine phosphatase (PTP) family AT3G55270 65.8 1.3e-61 235.3
Cpe01g00201 CCT 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 63.0 3.8e-58 223.8
Cpe04g00171 CCT 1 411 Protein tyrosine phosphatase (PTP) family AT5G39400 65.9 1.9e-157 552.7
Cpe03g00496 CCT 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 64.0 1.4e-152 536.6
Cpe04g00296 CST 8 612 Protein tyrosine phosphatase (PTP) family AT3G19420 63.8 1.8e-220 762.7
Cpe19g00640 . 31 650 Protein tyrosine phosphatase (PTP) family AT3G19420 57.6 3.1e-188 655.6
Cpe15g00475 CST 40 389 Protein tyrosine phosphatase (PTP) family AT3G19420 73.3 1.6e-160 563.5
Cpe04g00296 CST 6 612 Protein tyrosine phosphatase (PTP) family AT3G50110 56.6 2.2e-181 632.9
Cpe19g00640 . 33 650 Protein tyrosine phosphatase (PTP) family AT3G50110 55.6 3.4e-174 609.0
Cpe15g00475 CST 42 388 Protein tyrosine phosphatase (PTP) family AT3G50110 65.0 9.1e-135 478.0
Cpe18g00562 . 1 1191 Protein tyrosine phosphatase (PTP) family AT5G58160 55.3 0.0e+00 1094.0
Cpe04g01248 . 1 1233 Protein tyrosine phosphatase (PTP) family AT5G58160 54.6 0.0e+00 1078.5
Cpe02g00327 CCT 1 1361 Protein tyrosine phosphatase (PTP) family AT5G58160 51.6 7.8e-295 1010.7
Cpe06g00297 CCT 15 1312 Protein tyrosine phosphatase (PTP) family AT5G58160 50.3 4.4e-290 995.0
Cpe13g00776 . 1 848 Protein tyrosine phosphatase (PTP) family AT3G10550 66.2 0.0e+00 1121.7
Cpe13g00776 . 1 848 Protein tyrosine phosphatase (PTP) family AT5G04540 62.6 4.8e-309 1057.4
Cpe14g00952 . 20 339 Protein tyrosine phosphatase (PTP) family AT2G35320 60.0 1.4e-109 393.3
Cpe10g00935 CCT 1 638 Protein tyrosine phosphatase (PTP) family AT3G09100 64.7 1.5e-249 859.4
Cpe19g00296 CCT 24 625 Protein tyrosine phosphatase (PTP) family AT3G09100 66.7 6.1e-246 847.4
Cpe19g00296 CCT 24 625 Protein tyrosine phosphatase (PTP) family AT5G01290 63.8 8.3e-232 800.4
Cpe10g00935 CCT 1 638 Protein tyrosine phosphatase (PTP) family AT5G01290 62.2 2.7e-230 795.4
Cpe19g00296 CCT 66 625 Protein tyrosine phosphatase (PTP) family AT5G28210 54.6 3.2e-172 602.4
Cpe10g00935 CCT 82 638 Protein tyrosine phosphatase (PTP) family AT5G28210 54.4 8.6e-170 594.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008771 1 1 1 1 1 0 4 1 1 1 0 0 0 1 1 1 0 2 2 1 1 1 1 0 1 1 0 2 5 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe10g00935 Cpe_Chr10 FPKM 47.853046 57.796688 39.381912 34.683029 28.81502 26.695183 25.502018 34.872295 36.598923 32.767014