Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g00970 ATGGTCGATTTCCACCCCGAAATTTCCGTTTCGCCGCCGACCCACGACGGCCTCTACTTCTGGCAGTTCATGATCGCCGGGTCAATTGCAGGGTCCGTCGAACACATGACCATGTTTCCAGTGGACACTCTCAAGACACGCATACAAGCCATCGGCGGATCTTCAACAGTCCGACAAGCACTCGGCTCGATTCTAAAGATGGAAGGTCCAGCCGGGCTGTACAGTGGAATTGGGGCAATGGGTCTCGGTGCAGGACCTGCACACGCCGTCTACTTCTCAGTATATGAATTCTGCAAAGAGGGGTTTTCAGTTGGAAATCTTAACAACTCATTAGCACACGCCATTTCTGGGGTGTGTGCGACGGTGGCGAGCGACGCTGTGATAACGCCGATGGATGTGGTGAAACAGAGGCTGCAGTTGAAGAGCAGTCCTTATAAAGGAGTGGGAGACTGCGTGAGGAGAATTTTGGTTGAGGAAGGAATTGGGGCGCTCTATGCCTCTTATCGGACCACGGTGCTGATGAATGCACCGTACACGGCTGTCCATTTTGCCACTTATGAAGCGGCAAAAAGGGGATTGAAGGAGGTCTCACCGGGAAGTGACAACGACGAGAGGCTGATTGTTCATGCTACAGCCGGAGCAGCAGCTGGGTCTCTTGCTGCTGCTCTTACAACGCCATTAGACGTTGTGAAAACTCGGCTGCAATGCCAGGGAGTATGTGGGTGCGACAAGTTTTCAAGCAGTTCAATTGGGTACGTACTTGGGCGTGTCGTTAAGCAGGACGGCTACAATGGGCTGATGAAGGGATGGATTCCACGGGTGCTTTTCCACGCGCCCGCTGCTGCGATTTGCTGGTCGACCTACGAGGCTTCAAAAACCTTCTTTCAACAGCTCCACCATAGCAACAATTAA 912 52.74 MVDFHPEISVSPPTHDGLYFWQFMIAGSIAGSVEHMTMFPVDTLKTRIQAIGGSSTVRQALGSILKMEGPAGLYSGIGAMGLGAGPAHAVYFSVYEFCKEGFSVGNLNNSLAHAISGVCATVASDAVITPMDVVKQRLQLKSSPYKGVGDCVRRILVEEGIGALYASYRTTVLMNAPYTAVHFATYEAAKRGLKEVSPGSDNDERLIVHATAGAAAGSLAAALTTPLDVVKTRLQCQGVCGCDKFSSSSIGYVLGRVVKQDGYNGLMKGWIPRVLFHAPAAAICWSTYEASKTFFQQLHHSNN 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5487159 5488454 + Cp4.1LG10g07830.1 Cpe10g00970 476507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g00970 303 Gene3D Mitochondrial carrier domain 7 142 IPR023395 -
Cpe10g00970 303 ProSiteProfiles Solute carrier (Solcar) repeat profile. 108 192 IPR018108 -
Cpe10g00970 303 ProSiteProfiles Solute carrier (Solcar) repeat profile. 204 294 IPR018108 -
Cpe10g00970 303 SUPERFAMILY Mitochondrial carrier 16 289 IPR023395 -
Cpe10g00970 303 PRINTS Mitochondrial carrier protein signature 23 36 IPR002067 GO:0055085
Cpe10g00970 303 PRINTS Mitochondrial carrier protein signature 36 50 IPR002067 GO:0055085
Cpe10g00970 303 PRINTS Mitochondrial carrier protein signature 123 141 IPR002067 GO:0055085
Cpe10g00970 303 PRINTS Mitochondrial carrier protein signature 165 183 IPR002067 GO:0055085
Cpe10g00970 303 PRINTS Mitochondrial carrier protein signature 213 235 IPR002067 GO:0055085
Cpe10g00970 303 PANTHER MITOFERRIN-LIKE 3 302 - -
Cpe10g00970 303 Pfam Mitochondrial carrier protein 19 103 IPR018108 -
Cpe10g00970 303 Pfam Mitochondrial carrier protein 205 297 IPR018108 -
Cpe10g00970 303 Pfam Mitochondrial carrier protein 110 194 IPR018108 -
Cpe10g00970 303 PANTHER MITOFERRIN-1-RELATED 3 302 - -
Cpe10g00970 303 Gene3D Mitochondrial carrier domain 143 303 IPR023395 -
Cpe10g00970 303 ProSiteProfiles Solute carrier (Solcar) repeat profile. 18 101 IPR018108 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00970 Cpe-Chr10:5487159 Cpe16g00674 Cpe-Chr16:7025832 5.71E-157 dispersed
Cpe17g00470 Cpe-Chr17:3502403 Cpe10g00970 Cpe-Chr10:5487159 3.61E-22 dispersed
Cpe10g00970 Cpe-Chr10:5487159 Cpe19g00268 Cpe-Chr19:2232260 7.41E-174 wgd
Cpe10g00970 Cpe-Chr10:5487159 Cpe05g00987 Cpe-Chr5:6421710 1.25E-12 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g00970 K15113 - csv:101210464 543.117