Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g00996 ATGGCGGTTTCTCCCCACTCTTTTCCGCCCAGAAAGCGGCGTCCCTCGGCGGCGGCATTCGTCTCCCCCAAACTCTCCGCCCCTATTCTCCTCGAATCTCTCCTCTCTCTCTGTCATGAAATCTCCGCCATCAAACCGCTTCAATTCATCCTCAAACGCTACTCCATTTCCATGATTCGGAAATCCAGATTACTCCACATTTTTCTCCAAGACCTCCGCCGTAATCCGACGGTTTTGCTTTCCGCCTCCGCCTTGCTCTGCCTTGAAGAAATGTATATCGTTTTGCAAAGAATCAAAACCTTGATTGAAGATTGTTCTAATGGAAGCAAGATGTGGTTACTAACTCAGAACCAATCCATCGCTAACAACTTTCATGAACTCACCTTGGATTTAGCGACTCTTCTTGATATCTTCCCTATTAAGGACGCTGGATTAACCGAAGACGTTGAGGAATTGTTCTTCCTCTTGAGAAATCAGTGCTCCGAATCTGCTGCGTTTCTTGATCCAAGAGATGAAGATCTCCGATTGAGTGTGATGAACACGATCGATCGAATCAAAGATGAAATCGTTCCGGATTGTGCTGAACTGTCAGAGATTTTCTCCATGATCGATATTCGCGATTCGTCGAGTTGTCGTGAGGAAATCGAGAATCTCGAGGACGAAGTTCAGAATCAAACGGATGAGAAATCGAGATCCGATATGATTGCTTTGATCGGATTAGTTCGTTACGCGAAATGCGTTTTGTATGGAGCGTCCACGGCGGAATCTGGATTCCGCCGGAGTGATTCGATCTCGGATTTGCCTGTACCGGCGGATTTCAAGTGTCCGATTAATCTGGATTTAATGCAGGACCCTGTCGTCGTGGCAACAGGTCATACGTACGATCGTGCGGCCATAACGCTGTGGATTGAATCAGGGCACAACACGTGTCCAAAAACAGGTCAGACCTTGGCCCATACGAACCTAATTCCGAACCGGGGATTGAAAAACCTGATTGCTATGTGGTGCCGTCAGGAGAGAATTCCGTTCGATGTAGCGGAAAGCAACAAAGAGAGAGTCAACGGCGTCACGTTAAACAAGGCGGCGTTAGAGGCTATGAGAATGACGGCGTCATTTCTCGTTAAGAAGCTCGCCACGTCAGCAGACTCTTCAGTGAACGACGTCGTTTACGAGCTTCGTGTTTTGGCTAAAACAGATCCCGGAAGCCGTGGGTTCATCGCCCAAGCCGGAGCTGTACCGTTACTCATCCGTTACCTCAACTCTGATAACCCGACTCTGCAAGTTAACGCCGTCACGACGGTGCTAAACCTGTCCATTTTCGAAGCCAATAAATCGTTGATAATGGAAACCGACGGCGCGCTGATCGGAGTCATCGAGGTACTCCGCTCCGGCGCCACTTGGGAAGCGAAAGGGAACGCCGCCGCCACCATATTCAGCCTCTCCAGTATCCATTCTTACCGGCGGAGAATGGGGAGGAAGAGTCGTGTTATCAGGGGACTGCTCGATTTGGCCAAAAACGGGCCGATTAATTCGAAGAGGGATGCTCTGGTGACCATTTTGACACTAGCCAACGACAGGGAGATCGTCGGTCGGTTAATCGAAGGTGGGGTTATGGAGACGGTGAGCCATCTGATGAACAGCCTGCCGGAGGAGGCGGTGACGATTCTGGAAGTGGTGGTTAGGAAAGGGGGATTTGTGGCGATTGCTTCTGGTTTTTATGTGATTAAGAAATTAGGCTCTGTTTTGAGAGAGGGCTCCGATAGGGCCAGAGAGAGCGCCGCCGCGGCACTGGTGACAATGTGCAGGCAAGGTGGGTCGGAAATGGTGGCGGAGCTGGCGTCTATTGCTGGGATTGAGAGAGTGATGTGGGAATTGATGGGGAGTGGAACGGCGAGAGGGCGGCGAAAGGCGGCGTCGCTGTTGAGAATACTCCGGCGATGGTCAGCAGGTTTGGACGGAAACGGCGGCGCTGGAGGAGAGTCCGTGACAATTACTTCGTCGAGAATGGGTGGCGACTCAAACCCCATTGTTAGTTCATCAAGAGGAGCAATTGTGCATGTGTAG 2064 50.78 MAVSPHSFPPRKRRPSAAAFVSPKLSAPILLESLLSLCHEISAIKPLQFILKRYSISMIRKSRLLHIFLQDLRRNPTVLLSASALLCLEEMYIVLQRIKTLIEDCSNGSKMWLLTQNQSIANNFHELTLDLATLLDIFPIKDAGLTEDVEELFFLLRNQCSESAAFLDPRDEDLRLSVMNTIDRIKDEIVPDCAELSEIFSMIDIRDSSSCREEIENLEDEVQNQTDEKSRSDMIALIGLVRYAKCVLYGASTAESGFRRSDSISDLPVPADFKCPINLDLMQDPVVVATGHTYDRAAITLWIESGHNTCPKTGQTLAHTNLIPNRGLKNLIAMWCRQERIPFDVAESNKERVNGVTLNKAALEAMRMTASFLVKKLATSADSSVNDVVYELRVLAKTDPGSRGFIAQAGAVPLLIRYLNSDNPTLQVNAVTTVLNLSIFEANKSLIMETDGALIGVIEVLRSGATWEAKGNAAATIFSLSSIHSYRRRMGRKSRVIRGLLDLAKNGPINSKRDALVTILTLANDREIVGRLIEGGVMETVSHLMNSLPEEAVTILEVVVRKGGFVAIASGFYVIKKLGSVLREGSDRARESAAAALVTMCRQGGSEMVAELASIAGIERVMWELMGSGTARGRRKAASLLRILRRWSAGLDGNGGAGGESVTITSSRMGGDSNPIVSSSRGAIVHV 687
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5674434 5676497 + Cp4.1LG10g07530.1 Cpe10g00996 476533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g00996 687 Gene3D - 51 140 IPR036537 GO:0007166
Cpe10g00996 687 PANTHER U BOX DOMAIN-CONTAINING 11 661 - -
Cpe10g00996 687 Pfam Armadillo/beta-catenin-like repeat 401 438 IPR000225 GO:0005515
Cpe10g00996 687 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 410 452 IPR000225 GO:0005515
Cpe10g00996 687 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 16 11 661 - -
Cpe10g00996 687 SMART Ubox_2 272 335 IPR003613 GO:0004842|GO:0016567
Cpe10g00996 687 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 252 348 IPR013083 -
Cpe10g00996 687 ProSiteProfiles U-box domain profile. 268 342 IPR003613 GO:0004842|GO:0016567
Cpe10g00996 687 SUPERFAMILY ARM repeat 371 644 IPR016024 -
Cpe10g00996 687 CDD RING-Ubox_PUB 273 315 IPR045210 -
Cpe10g00996 687 Gene3D - 367 646 IPR011989 -
Cpe10g00996 687 Pfam U-box domain 269 340 IPR003613 GO:0004842|GO:0016567
Cpe10g00996 687 Coils Coil 208 235 - -
Cpe10g00996 687 SUPERFAMILY RING/U-box 259 341 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe10g00996 Cpe19g00149 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00791 Cpe-Chr9:7325977 Cpe10g00996 Cpe-Chr10:5674434 1.43E-134 dispersed
Cpe10g00996 Cpe-Chr10:5674434 Cpe20g00479 Cpe-Chr20:2772873 1.45E-130 dispersed
Cpe10g00996 Cpe-Chr10:5674434 Cpe19g00149 Cpe-Chr19:1189891 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g00996 - - csv:101205143 1149.04