Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g01018 ATGACCTTGGCGTCGGAGCTTAGCCAGGGAGATTCTGCTACTGAACGCAGTGCTCGAGAGGGCATTCCTCAATCGAGAAACGCAGGCGCTGATGGGGATGCCTCGGAGGCAGCTGGGGGAAATAGCAGGGATTCTTCTTATCAAAGGTACGATATTCAACAGGCTGCTCGGGGGATTGAGCAGATTCTCCCATTTAGTTTTCTTCTACTGGTGGTCTTCATTCGACAGCATTTGCAAGAGCTACAAAACTATTTTACTTTTGATGTGATATCTGTTGCCTTGTCAATTGAAATGGGGGAGAGAAAAATCTCTATTTTGGTTGGCATATCTCTTGCATTCACCATTCATGTTATTGGTGTGTACTGGTGGTATCAAAATGATGGCCTTTTATATCCGCTGATCATGCTTCCTCCTAGAGCAATACCTCCTTTTTGGCATGCTATTTTCATCATCATGGTGAATGACACTTTGGTCCGCCAAGCAGCGATGGTGGTGAAGTGCATTCTATTGATGTATTACAAGAACAGCAGAGGCCGCAATTATCGTAAACAGGGTCAAATGCTAACTTTAGTCGAATATTTGCTACTACTGTACCGTGCGTTATTGCCCACTCCTGTCTGGTATCGCTTCTTTTTGAACAAAGAGTACGGGAGTCTATTTTCTTCGCTATTGACGGGACTGTACTTAACTTTCAAACTCACATCTGTTGTTGAAAAGGTGCAATCCTTCTTTGCTGCTTTGAAAGCACTGTCACGTAAAGAGGTGCATTATGGCGCATATGCTACGTCGGAGCAGGTGAATGCAGCTGGTGATTTGTGTGCTATTTGCCAAGAGAAGATGCATGCTCCTATCCTACTCCGATGTAAACACATATTTTGTGAAGATTGTGTATCAGAGTGGTTCGAGCGGGAACGAACATGTCCATTGTGTAGGGCTTTGGTTAAACCTGCAGATCTGAGGTCATTTGGTGATGGATCAACCAGTCTGTTTTTCCAGGTTTTCTAA 1005 44.28 MTLASELSQGDSATERSAREGIPQSRNAGADGDASEAAGGNSRDSSYQRYDIQQAARGIEQILPFSFLLLVVFIRQHLQELQNYFTFDVISVALSIEMGERKISILVGISLAFTIHVIGVYWWYQNDGLLYPLIMLPPRAIPPFWHAIFIIMVNDTLVRQAAMVVKCILLMYYKNSRGRNYRKQGQMLTLVEYLLLLYRALLPTPVWYRFFLNKEYGSLFSSLLTGLYLTFKLTSVVEKVQSFFAALKALSRKEVHYGAYATSEQVNAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPADLRSFGDGSTSLFFQVF 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5875735 5881585 + Cp4.1LG10g07320.1 Cpe10g01018 476555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g01018 334 ProSiteProfiles Zinc finger RING-type profile. 273 311 IPR001841 -
Cpe10g01018 334 SUPERFAMILY RING/U-box 265 316 - -
Cpe10g01018 334 MobiDBLite consensus disorder prediction 1 21 - -
Cpe10g01018 334 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 8 334 IPR044235 GO:0061630|GO:1904294
Cpe10g01018 334 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 248 321 IPR013083 -
Cpe10g01018 334 ProSitePatterns Zinc finger RING-type signature. 288 297 IPR017907 -
Cpe10g01018 334 SMART ring_2 273 310 IPR001841 -
Cpe10g01018 334 CDD RING-HC_RNFT1_like 272 311 - -
Cpe10g01018 334 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 8 334 - -
Cpe10g01018 334 Pfam Zinc finger, C3HC4 type (RING finger) 271 314 - -
Cpe10g01018 334 MobiDBLite consensus disorder prediction 1 45 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g01018 Cpe-Chr10:5875735 Cpe01g00346 Cpe-Chr1:1971042 6.74E-12 dispersed
Cpe10g01018 Cpe-Chr10:5875735 Cpe19g00170 Cpe-Chr19:1381119 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g01018 - K22379 csv:101205267 577.4