Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe10g01018 | ATGACCTTGGCGTCGGAGCTTAGCCAGGGAGATTCTGCTACTGAACGCAGTGCTCGAGAGGGCATTCCTCAATCGAGAAACGCAGGCGCTGATGGGGATGCCTCGGAGGCAGCTGGGGGAAATAGCAGGGATTCTTCTTATCAAAGGTACGATATTCAACAGGCTGCTCGGGGGATTGAGCAGATTCTCCCATTTAGTTTTCTTCTACTGGTGGTCTTCATTCGACAGCATTTGCAAGAGCTACAAAACTATTTTACTTTTGATGTGATATCTGTTGCCTTGTCAATTGAAATGGGGGAGAGAAAAATCTCTATTTTGGTTGGCATATCTCTTGCATTCACCATTCATGTTATTGGTGTGTACTGGTGGTATCAAAATGATGGCCTTTTATATCCGCTGATCATGCTTCCTCCTAGAGCAATACCTCCTTTTTGGCATGCTATTTTCATCATCATGGTGAATGACACTTTGGTCCGCCAAGCAGCGATGGTGGTGAAGTGCATTCTATTGATGTATTACAAGAACAGCAGAGGCCGCAATTATCGTAAACAGGGTCAAATGCTAACTTTAGTCGAATATTTGCTACTACTGTACCGTGCGTTATTGCCCACTCCTGTCTGGTATCGCTTCTTTTTGAACAAAGAGTACGGGAGTCTATTTTCTTCGCTATTGACGGGACTGTACTTAACTTTCAAACTCACATCTGTTGTTGAAAAGGTGCAATCCTTCTTTGCTGCTTTGAAAGCACTGTCACGTAAAGAGGTGCATTATGGCGCATATGCTACGTCGGAGCAGGTGAATGCAGCTGGTGATTTGTGTGCTATTTGCCAAGAGAAGATGCATGCTCCTATCCTACTCCGATGTAAACACATATTTTGTGAAGATTGTGTATCAGAGTGGTTCGAGCGGGAACGAACATGTCCATTGTGTAGGGCTTTGGTTAAACCTGCAGATCTGAGGTCATTTGGTGATGGATCAACCAGTCTGTTTTTCCAGGTTTTCTAA | 1005 | 44.28 | MTLASELSQGDSATERSAREGIPQSRNAGADGDASEAAGGNSRDSSYQRYDIQQAARGIEQILPFSFLLLVVFIRQHLQELQNYFTFDVISVALSIEMGERKISILVGISLAFTIHVIGVYWWYQNDGLLYPLIMLPPRAIPPFWHAIFIIMVNDTLVRQAAMVVKCILLMYYKNSRGRNYRKQGQMLTLVEYLLLLYRALLPTPVWYRFFLNKEYGSLFSSLLTGLYLTFKLTSVVEKVQSFFAALKALSRKEVHYGAYATSEQVNAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPADLRSFGDGSTSLFFQVF | 334 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 5875735 | 5881585 | + | Cp4.1LG10g07320.1 | Cpe10g01018 | 476555 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe10g01018 | 334 | ProSiteProfiles | Zinc finger RING-type profile. | 273 | 311 | IPR001841 | - | |
Cpe10g01018 | 334 | SUPERFAMILY | RING/U-box | 265 | 316 | - | - | |
Cpe10g01018 | 334 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Cpe10g01018 | 334 | PANTHER | UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN | 8 | 334 | IPR044235 | GO:0061630|GO:1904294 | |
Cpe10g01018 | 334 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 248 | 321 | IPR013083 | - | |
Cpe10g01018 | 334 | ProSitePatterns | Zinc finger RING-type signature. | 288 | 297 | IPR017907 | - | |
Cpe10g01018 | 334 | SMART | ring_2 | 273 | 310 | IPR001841 | - | |
Cpe10g01018 | 334 | CDD | RING-HC_RNFT1_like | 272 | 311 | - | - | |
Cpe10g01018 | 334 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 8 | 334 | - | - | |
Cpe10g01018 | 334 | Pfam | Zinc finger, C3HC4 type (RING finger) | 271 | 314 | - | - | |
Cpe10g01018 | 334 | MobiDBLite | consensus disorder prediction | 1 | 45 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe10g01018 | Cpe-Chr10:5875735 | Cpe01g00346 | Cpe-Chr1:1971042 | 6.74E-12 | dispersed | |
Cpe10g01018 | Cpe-Chr10:5875735 | Cpe19g00170 | Cpe-Chr19:1381119 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe10g01018 | - | K22379 | csv:101205267 | 577.4 |