Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g01029 ATGGCAGAATTAGATCAAGAACTTGATCCTCCTCCCTTCTTTCTCTGCCCCATCTCTCTCCAAATCATGAAAGACCCCGTCACCGTCGCTTCCGGCATAACCTACGACCGCGAAAGCATCGAGAAATGGTTGTTTTCAGACAGACACAAGACGTGCCCCGTCACACAGGTCGTCTTGTCAAGCTTCGACATCACTCCCAACCATACTCTAAGACGAGTCATTCAAGCTTGGTGCACTGTCAATGCTTGCAAGGGTATCGAGAGGATTCCGACGCCTAAGCCACCGGTCGATTGTAAGCAAGTGGTTCGAATTCTTGCAGATGCCAAGTTGTCTCCGTTCTCGCAACAGAATTGTCTCCGACGACTCCGATCTATTGCAGCGGGGAGTGAATCTAATAAACGTTGCATGGAAGCTGCTGGAGCTGTGGAGTTCTTGGCTGGAATTGTGTGTAATTCCACCAACGTGGAATTCAGCTCAGAAGATTACGCTTACTTGATTGACGACCAGTTCGCGAATTTGGGGGATGAGGCTTTGAGCATTCTTTACAAACTTCAAATCTCCGAATCCGGCCTGAAATTTCTACTCGCCAACAATGGCGGCATCTTCGTCTCAACCTTAACCAAAATCTTGCAAAACGGAACCTATGGCTCCCGAGCATATTCAGTAATGCTTCTAACTTCAATGTTCGAAGTTGCAGATCAGATTCAGATCCTCAGCCTAAACACCGATTTCTTCGTCGAAATCGTCCAAATTCTGAAGGATCAGATCTCGAAACAGGCTTCGAAATCGGCATTGAAACTGCTAATCGGTCTTTGTTCGAGTTCCAGAAACAGAGTTAAGGCGGTCAAAGCCGGTGCGGTTCCGGTTATGATCGATCTCCTCCTCGATCTCGATTCGTCAGAGAAGCGTTCGTGCGAGATGATTCTCGTGACACTCGATCTACTCTGCGGCTGTGCCGACGGTAGGGCGGAGGTATTGAATCACGCGGCAGGGATCGCTGTTGTATCGAAGAAGATTCTGAGAGTTTCGACACTCGGAAGCGAGAAGGCCGTCGGAATCTTGTGCTCTATCGCGAGATTCTCGGCGAGTGAAAGCGTCGTCCAGGAAATGATGCGGCTCGGAGTTGTGACGAAGCTCTGTTTTCTGCTTCAGGTCGTCGGCGCCGGAGGCAAAGCGAAGGAGAAAGCGAAAGAGATTCTGAAGCTTCATGGTCGGACATGGCGGAATTCTTCATGTTTGCCTTCGAGTCTGCGATCTTCTTTTCCACATTAG 1272 49.29 MAELDQELDPPPFFLCPISLQIMKDPVTVASGITYDRESIEKWLFSDRHKTCPVTQVVLSSFDITPNHTLRRVIQAWCTVNACKGIERIPTPKPPVDCKQVVRILADAKLSPFSQQNCLRRLRSIAAGSESNKRCMEAAGAVEFLAGIVCNSTNVEFSSEDYAYLIDDQFANLGDEALSILYKLQISESGLKFLLANNGGIFVSTLTKILQNGTYGSRAYSVMLLTSMFEVADQIQILSLNTDFFVEIVQILKDQISKQASKSALKLLIGLCSSSRNRVKAVKAGAVPVMIDLLLDLDSSEKRSCEMILVTLDLLCGCADGRAEVLNHAAGIAVVSKKILRVSTLGSEKAVGILCSIARFSASESVVQEMMRLGVVTKLCFLLQVVGAGGKAKEKAKEILKLHGRTWRNSSCLPSSLRSSFPH 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5977745 5980189 + Cp4.1LG10g07220.1 Cpe10g01029 476566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g01029 423 SUPERFAMILY ARM repeat 102 384 IPR016024 -
Cpe10g01029 423 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 7 422 - -
Cpe10g01029 423 SUPERFAMILY RING/U-box 7 85 - -
Cpe10g01029 423 Pfam U-box domain 11 79 IPR003613 GO:0004842|GO:0016567
Cpe10g01029 423 CDD RING-Ubox_PUB 14 56 IPR045210 -
Cpe10g01029 423 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 86 IPR013083 -
Cpe10g01029 423 PANTHER WDSAM1 PROTEIN 7 422 IPR045185 GO:0061630
Cpe10g01029 423 ProSiteProfiles U-box domain profile. 9 84 IPR003613 GO:0004842|GO:0016567
Cpe10g01029 423 SMART Ubox_2 13 77 IPR003613 GO:0004842|GO:0016567
Cpe10g01029 423 Gene3D - 98 404 IPR011989 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01449 Cpe-Chr2:12494606 Cpe10g01029 Cpe-Chr10:5977745 5.03E-56 dispersed
Cpe03g01651 Cpe-Chr3:12635024 Cpe10g01029 Cpe-Chr10:5977745 1.34E-72 dispersed
Cpe08g00451 Cpe-Chr8:2910475 Cpe10g01029 Cpe-Chr10:5977745 2.09E-76 dispersed
Cpe08g00965 Cpe-Chr8:7576436 Cpe10g01029 Cpe-Chr10:5977745 3.57E-156 dispersed
Cpe10g01029 Cpe-Chr10:5977745 Cpe16g00824 Cpe-Chr16:7940610 1.32E-141 dispersed
Cpe06g00498 Cpe-Chr6:2960517 Cpe10g01029 Cpe-Chr10:5977745 5.61E-11 transposed
Cpe10g01029 Cpe-Chr10:5977745 Cpe19g00185 Cpe-Chr19:1508431 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g01029 - - cmo:103485961 666.766