Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g01038 ATGAATGACTTGATGACCAAATCGTTCACGAGCTATGTCGATCTGAAGAAGGCCGCCATGAAAGATATCGACCTCGAAGCCGGTTTAGAAATGGCATCGTCCGCTCCCGGTGACAATGGCGACATGGGTCTCTTTCTCGAGGAGGCCGAGAAGGTGAAAACCGAGATGGGTTCGATTAGAGAGATTTTAGTGAAGCTCCAACAAGCGAATGAAGAGACCAAATCGGCTCATAAACCCGAAACCCTCAAATCGCTTCGGAATACGATCAATGTCGACATTGTAACAGTTCTGAAAAAGGCTCGATCCATCCGATCCCACCTCGAGGAAATGGACCGTGCCAATGCTGCCAAGAAACGTCTCTCGGGTAGTAAAGAGGGCACTGCCATTTACAGAACACGAATTGCGGTGACGAACGGGTTACGAAAGAAGCTAAAGGAGCTGATGATGGAGTTTCAGAGCTTGAGGCAGAGGATGATGACGGAGTATAAGGAGACGGTAGGACGGCGATACTTTACAGTGACGGGGGAGAAAGCGAACGAGGAGGTGATAGAGAGGATAATATCTGATGGCGGGGAAGAGTTTTTAGGGAGGGCGATAAAGGAGCACGGGCAAGGGGGGAAGGTGGCGGTGGCGGAGACGGTGGAGGAGATACAGGACCGACACGGGGCGGCGAAGGAGATAGAGAAGAGCTTGTTGGAGCTGCACCAAGTGTTCTTGGACATGGCGGTGATGGTGGAGGCACAAGGGGAGAAGATGGATAACATAGAACATCATGTGATGAATGCTTCGCAATATGTTAGGGATGGGACAAAGGAATTGAAGAGTGCTAAGGAATTGCAAAGGAGTAGTAGAAAATGTATGTGTTTGGGGATTTTGCTATTGCTTTTGATTATTTTGGTTGTTGTTGTTCCTATTAGTGTTAGTTTTGGAAGTTCTTGA 939 48.46 MNDLMTKSFTSYVDLKKAAMKDIDLEAGLEMASSAPGDNGDMGLFLEEAEKVKTEMGSIREILVKLQQANEETKSAHKPETLKSLRNTINVDIVTVLKKARSIRSHLEEMDRANAAKKRLSGSKEGTAIYRTRIAVTNGLRKKLKELMMEFQSLRQRMMTEYKETVGRRYFTVTGEKANEEVIERIISDGGEEFLGRAIKEHGQGGKVAVAETVEEIQDRHGAAKEIEKSLLELHQVFLDMAVMVEAQGEKMDNIEHHVMNASQYVRDGTKELKSAKELQRSSRKCMCLGILLLLLIILVVVVPISVSFGSS 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6053022 6054312 + Cp4.1LG10g07060.1 Cpe10g01038 476575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g01038 312 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 214 276 IPR000727 -
Cpe10g01038 312 PANTHER SYNTAXIN-RELATED PROTEIN KNOLLE 4 305 - -
Cpe10g01038 312 Pfam SNARE domain 251 302 IPR000727 -
Cpe10g01038 312 Gene3D - 38 166 - -
Cpe10g01038 312 Pfam Syntaxin 45 249 IPR006011 GO:0016020
Cpe10g01038 312 SMART tSNARE_6 209 276 IPR000727 -
Cpe10g01038 312 CDD SNARE_syntaxin1-like 213 274 - -
Cpe10g01038 312 PANTHER SYNTAXIN 4 305 IPR045242 -
Cpe10g01038 312 CDD SynN 42 198 IPR006011 GO:0016020
Cpe10g01038 312 SUPERFAMILY t-snare proteins 41 269 IPR010989 GO:0016020|GO:0016192
Cpe10g01038 312 SMART SynN_4 37 163 IPR006011 GO:0016020
Cpe10g01038 312 ProSitePatterns Syntaxin / epimorphin family signature. 220 260 IPR006012 GO:0005484|GO:0006886|GO:0016020
Cpe10g01038 312 Coils Coil 137 157 - -
Cpe10g01038 312 Gene3D - 209 310 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe08g00962 Cpe10g01038 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00086 Cpe-Chr5:418371 Cpe10g01038 Cpe-Chr10:6053022 2.83E-17 dispersed
Cpe10g00620 Cpe-Chr10:3594324 Cpe10g01038 Cpe-Chr10:6053022 1.72E-69 dispersed
Cpe10g01038 Cpe-Chr10:6053022 Cpe20g00409 Cpe-Chr20:2339171 3.44E-90 dispersed
Cpe10g01038 Cpe-Chr10:6053022 Cpe19g00189 Cpe-Chr19:1539921 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g01038 K08486 - csv:101220775 503.827