Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe10g01038 | ATGAATGACTTGATGACCAAATCGTTCACGAGCTATGTCGATCTGAAGAAGGCCGCCATGAAAGATATCGACCTCGAAGCCGGTTTAGAAATGGCATCGTCCGCTCCCGGTGACAATGGCGACATGGGTCTCTTTCTCGAGGAGGCCGAGAAGGTGAAAACCGAGATGGGTTCGATTAGAGAGATTTTAGTGAAGCTCCAACAAGCGAATGAAGAGACCAAATCGGCTCATAAACCCGAAACCCTCAAATCGCTTCGGAATACGATCAATGTCGACATTGTAACAGTTCTGAAAAAGGCTCGATCCATCCGATCCCACCTCGAGGAAATGGACCGTGCCAATGCTGCCAAGAAACGTCTCTCGGGTAGTAAAGAGGGCACTGCCATTTACAGAACACGAATTGCGGTGACGAACGGGTTACGAAAGAAGCTAAAGGAGCTGATGATGGAGTTTCAGAGCTTGAGGCAGAGGATGATGACGGAGTATAAGGAGACGGTAGGACGGCGATACTTTACAGTGACGGGGGAGAAAGCGAACGAGGAGGTGATAGAGAGGATAATATCTGATGGCGGGGAAGAGTTTTTAGGGAGGGCGATAAAGGAGCACGGGCAAGGGGGGAAGGTGGCGGTGGCGGAGACGGTGGAGGAGATACAGGACCGACACGGGGCGGCGAAGGAGATAGAGAAGAGCTTGTTGGAGCTGCACCAAGTGTTCTTGGACATGGCGGTGATGGTGGAGGCACAAGGGGAGAAGATGGATAACATAGAACATCATGTGATGAATGCTTCGCAATATGTTAGGGATGGGACAAAGGAATTGAAGAGTGCTAAGGAATTGCAAAGGAGTAGTAGAAAATGTATGTGTTTGGGGATTTTGCTATTGCTTTTGATTATTTTGGTTGTTGTTGTTCCTATTAGTGTTAGTTTTGGAAGTTCTTGA | 939 | 48.46 | MNDLMTKSFTSYVDLKKAAMKDIDLEAGLEMASSAPGDNGDMGLFLEEAEKVKTEMGSIREILVKLQQANEETKSAHKPETLKSLRNTINVDIVTVLKKARSIRSHLEEMDRANAAKKRLSGSKEGTAIYRTRIAVTNGLRKKLKELMMEFQSLRQRMMTEYKETVGRRYFTVTGEKANEEVIERIISDGGEEFLGRAIKEHGQGGKVAVAETVEEIQDRHGAAKEIEKSLLELHQVFLDMAVMVEAQGEKMDNIEHHVMNASQYVRDGTKELKSAKELQRSSRKCMCLGILLLLLIILVVVVPISVSFGSS | 312 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 6053022 | 6054312 | + | Cp4.1LG10g07060.1 | Cpe10g01038 | 476575 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe10g01038 | 312 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 214 | 276 | IPR000727 | - | |
Cpe10g01038 | 312 | PANTHER | SYNTAXIN-RELATED PROTEIN KNOLLE | 4 | 305 | - | - | |
Cpe10g01038 | 312 | Pfam | SNARE domain | 251 | 302 | IPR000727 | - | |
Cpe10g01038 | 312 | Gene3D | - | 38 | 166 | - | - | |
Cpe10g01038 | 312 | Pfam | Syntaxin | 45 | 249 | IPR006011 | GO:0016020 | |
Cpe10g01038 | 312 | SMART | tSNARE_6 | 209 | 276 | IPR000727 | - | |
Cpe10g01038 | 312 | CDD | SNARE_syntaxin1-like | 213 | 274 | - | - | |
Cpe10g01038 | 312 | PANTHER | SYNTAXIN | 4 | 305 | IPR045242 | - | |
Cpe10g01038 | 312 | CDD | SynN | 42 | 198 | IPR006011 | GO:0016020 | |
Cpe10g01038 | 312 | SUPERFAMILY | t-snare proteins | 41 | 269 | IPR010989 | GO:0016020|GO:0016192 | |
Cpe10g01038 | 312 | SMART | SynN_4 | 37 | 163 | IPR006011 | GO:0016020 | |
Cpe10g01038 | 312 | ProSitePatterns | Syntaxin / epimorphin family signature. | 220 | 260 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
Cpe10g01038 | 312 | Coils | Coil | 137 | 157 | - | - | |
Cpe10g01038 | 312 | Gene3D | - | 209 | 310 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe08g00962 | Cpe10g01038 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe05g00086 | Cpe-Chr5:418371 | Cpe10g01038 | Cpe-Chr10:6053022 | 2.83E-17 | dispersed | |
Cpe10g00620 | Cpe-Chr10:3594324 | Cpe10g01038 | Cpe-Chr10:6053022 | 1.72E-69 | dispersed | |
Cpe10g01038 | Cpe-Chr10:6053022 | Cpe20g00409 | Cpe-Chr20:2339171 | 3.44E-90 | dispersed | |
Cpe10g01038 | Cpe-Chr10:6053022 | Cpe19g00189 | Cpe-Chr19:1539921 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe10g01038 | K08486 | - | csv:101220775 | 503.827 |