Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe10g01069 | ATGCCCTTCCTTTTTCGTTTTTCTTCTCAGGCTGGAACTAGAAATGTTGAAATAGAGTTAACCACCATATCAAGTACAAACCACGTCGAGCTCACTCCCAGCGATGCAGGTTTCCAAGATAGGTATATTGTTCAAGAGATAATCAAGGATATGGCGAAAAACAGACCCATTGACTCCAAAGGGAAAAGGGGACATAAAGGGAAGATGCTGTGGGTCGACAAGTATCGTCCAAAAACCCTAGATCAGATCACAGTTCATCAAGATGTAGCACAGAATCTTAAGAAACTGGTTACCGAGCAGGACTGCCCTCATTTGCTCTTCTTTGGCCCCTCCGGTTCCGGAAAGAAAACCCTAGTCATGGCGCTTATCCGGCAGATGTTTGGAGCAAGTGCGGAGAAGATTGTCAAGGTACTAGAGTTCATTGGGAAGAAAGAAGGACTGCAACTTCCATCTGGATTTGCTTCCCGCATTGCAGAAAAATCAAACCGGAGTTTGAGGAGAGCTATACTATCATTCGAGACTTGTCGTGTTCAACAGTATCCTTTTGTTAGTAACCAGGCAATACCACCGATGGATTGGGAGGAGTACATCTCTGAGATAGCGTCTGACATAATGAAGGAGCAGAGCCCCAAGAGACTGTACCAGATTCGTGGGAAGTTATATGAACTACTGGTTAATTGTATTCCACCAGAGATCATATTGAAGAGGCTGCTTTATGAGCTACTCAAGAAATTGGATGCTGAATTAAAGCATGAGGTCTGTCATTGGGCTGCATATTATGAACACAGGATGCGGCTTGGCCAGAAATCCATCTTCCATATTGAAGGTAAATCCATTTGCTTTTGTGGCAAAGTTCATGAGCATATACAAGAGTTTCCTCATTTCAACGTTCGGCTGAAGAAAAAGCAACTGTATGTTCGTAGTTTTAGCGTGTCGGTGAATCAAGACAATGTGGTGCCATCTTATGTTCTTCAGTCAGTTTTGTTTGGCACTAGTTTGTTTGTTTGTTCATCATCCTCTAGGTTTTATCTATCAGGGAACTTGAAGCTGAACTCTTAG | 1059 | 42.97 | MPFLFRFSSQAGTRNVEIELTTISSTNHVELTPSDAGFQDRYIVQEIIKDMAKNRPIDSKGKRGHKGKMLWVDKYRPKTLDQITVHQDVAQNLKKLVTEQDCPHLLFFGPSGSGKKTLVMALIRQMFGASAEKIVKVLEFIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQYPFVSNQAIPPMDWEEYISEIASDIMKEQSPKRLYQIRGKLYELLVNCIPPEIILKRLLYELLKKLDAELKHEVCHWAAYYEHRMRLGQKSIFHIEGKSICFCGKVHEHIQEFPHFNVRLKKKQLYVRSFSVSVNQDNVVPSYVLQSVLFGTSLFVCSSSSRFYLSGNLKLNS | 352 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 6439149 | 6445971 | - | Cp4.1LG10g10960.1 | Cpe10g01069 | 476606 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe10g01069 | 352 | PANTHER | REPLICATION FACTOR C SUBUNIT 3 | 70 | 129 | - | - | |
| Cpe10g01069 | 352 | PANTHER | REPLICATION FACTOR C SUBUNIT 3 | 8 | 64 | - | - | |
| Cpe10g01069 | 352 | PANTHER | REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT | 70 | 129 | - | - | |
| Cpe10g01069 | 352 | PANTHER | REPLICATION FACTOR C SUBUNIT 3 | 130 | 276 | - | - | |
| Cpe10g01069 | 352 | PANTHER | REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT | 8 | 64 | - | - | |
| Cpe10g01069 | 352 | CDD | AAA | 87 | 131 | - | - | |
| Cpe10g01069 | 352 | Gene3D | - | 192 | 282 | - | - | |
| Cpe10g01069 | 352 | Gene3D | - | 62 | 171 | IPR027417 | - | |
| Cpe10g01069 | 352 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 71 | 140 | IPR027417 | - | |
| Cpe10g01069 | 352 | SUPERFAMILY | post-AAA+ oligomerization domain-like | 191 | 276 | IPR008921 | GO:0003677|GO:0006260 | |
| Cpe10g01069 | 352 | Pfam | Rad17 P-loop domain | 68 | 126 | - | - | |
| Cpe10g01069 | 352 | PANTHER | REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT | 130 | 276 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe08g00457 | Cpe-Chr8:2937720 | Cpe10g01069 | Cpe-Chr10:6439149 | 1.99E-15 | dispersed | |
| Cpe08g00458 | Cpe-Chr8:2949803 | Cpe10g01069 | Cpe-Chr10:6439149 | 4.24E-16 | dispersed | |
| Cpe10g01069 | Cpe-Chr10:6439149 | Cpe19g00815 | Cpe-Chr19:6100226 | 7.49E-14 | dispersed | |
| Cpe10g01069 | Cpe-Chr10:6439149 | Cpe01g02062 | Cpe-Chr1:17463372 | 1.22E-14 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe10g01069 | K10756 | - | csv:101221072 | 349.362 |