Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g01086 ATGGATCTCTCACAGTCTTTAGATCCGCAAGTCCTTCTGGGTTTGGCTGTGGCTGTTTTAGCCCTTGCCGTTGGTGCTCTCTATGTATTATCCTCGTCTAAAAAAAGCAAATCCAGAGAGGTATTCAAGGAGTTTAAACTTATCAAACGCGTGCAGCTGAGCCATAATGTGGCGAAGTTTACATTTACACTCCCAAATCCTACTTCAGTTTTGGGTCTTCCCATTGGACAACATATCAGTTGCAGGGGCAAGGATGGCCAAGGTGAAGAGGTCATCAAACCGTACACACCGATTACTTTAGATTCTGATGTTGGTTATTTTGAGCTCGTCATAAAGATGTATCCCCAAGGAAGGATGTCGCATCATTTCCGACAGATGCGTGTTGGCGATTTTCTTGCTGTAAAGGGGCCCAAGGGGCGTTTCAGGTATCAACCTGGGCAGGTCCGAGCATTTGGGATGCTCGCTGGAGGCTCCGGCATTACTCCTATGTATCAAGTTGCTCGAGCAATATTAGAAAATCCGAACGACGAGACGAAGGTACACCTCATCTATGCCAATGTCACCTATGAGGACATTCTTTTAAAGGAGGAGTTGGATCTTCTTGCCAAAAGGTACCCAGATAGCTTCAAGCTCTACTATGTCTTAAACCAGCCTCCTGAAGAATGGGATGGTGGTGTCGGATTCGTATCGAAGGAGATGATTCAAACCCACTGCCCCGCTCCTGCTTCTGATATTCAGGTTTTAAGATGTGGGCCACCACCAATGAACAAGGCCATGGGTGCTCATCTTGAAGCTCTTGGATATGCACCTGAGATGCTGTTCATGTTCTGA 831 46.57 MDLSQSLDPQVLLGLAVAVLALAVGALYVLSSSKKSKSREVFKEFKLIKRVQLSHNVAKFTFTLPNPTSVLGLPIGQHISCRGKDGQGEEVIKPYTPITLDSDVGYFELVIKMYPQGRMSHHFRQMRVGDFLAVKGPKGRFRYQPGQVRAFGMLAGGSGITPMYQVARAILENPNDETKVHLIYANVTYEDILLKEELDLLAKRYPDSFKLYYVLNQPPEEWDGGVGFVSKEMIQTHCPAPASDIQVLRCGPPPMNKAMGAHLEALGYAPEMLFMF 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6608643 6614364 + Cp4.1LG10g10810.1 Cpe10g01086 476623

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g01086 276 PRINTS Cytochrome B5 reductase signature 93 100 - -
Cpe10g01086 276 PRINTS Cytochrome B5 reductase signature 246 254 - -
Cpe10g01086 276 PRINTS Cytochrome B5 reductase signature 71 82 - -
Cpe10g01086 276 PRINTS Cytochrome B5 reductase signature 152 171 - -
Cpe10g01086 276 PRINTS Cytochrome B5 reductase signature 190 201 - -
Cpe10g01086 276 PRINTS Cytochrome B5 reductase signature 129 143 - -
Cpe10g01086 276 Gene3D Translation factors 37 134 - -
Cpe10g01086 276 CDD cyt_b5_reduct_like 45 276 - -
Cpe10g01086 276 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 40 144 IPR017927 GO:0016491
Cpe10g01086 276 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 132 275 IPR039261 -
Cpe10g01086 276 Pfam Oxidoreductase NAD-binding domain 153 258 IPR001433 GO:0016491
Cpe10g01086 276 PANTHER NADH-CYTOCHROME B5 REDUCTASE 5 276 - -
Cpe10g01086 276 SUPERFAMILY Riboflavin synthase domain-like 40 145 IPR017938 -
Cpe10g01086 276 PANTHER NADH-CYTOCHROME B5 REDUCTASE 5 276 IPR001834 GO:0016491
Cpe10g01086 276 Gene3D - 135 276 IPR039261 -
Cpe10g01086 276 Pfam Oxidoreductase FAD-binding domain 45 143 IPR008333 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g01086 K00326 CYB5R; cytochrome-b5 reductase [EC:1.6.2.2] - csv:101212569 490.345
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g01365 Cpe-Chr8:9811681 Cpe10g01086 Cpe-Chr10:6608643 6.57E-159 dispersed
Cpe10g01086 Cpe-Chr10:6608643 Cpe16g00938 Cpe-Chr16:8657691 7.02E-123 dispersed
Cpe10g01086 Cpe-Chr10:6608643 Cpe19g00231 Cpe-Chr19:1918564 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g84 . . . . Bpe04g01356 Bpe03g01064 Bma04g01430 Bma10g00255 . . Cma03g00173 Cma07g01119 Car03g00161 . Sed03g2083 Cpe10g01086 . Bhi03g02557 Tan03g0549 Cmetu08g0889 . Hepe04g0560 . . . . . . . . . . . . . Lsi01g01736 Csa04g01830 Chy08g00202 Cme04g02153 Blo07g01200 . Bda03g01493 Bda05g00993 . . . . . Cmo03g00203 Cmo07g01169 . . Car06g00039 . . . . . . . . . . Cla10g01589 Cam10g1638 Cec10g1687 Cco10g1651 Clacu10g1653 Cmu10g2408 Cre10g1789 Lsi03g01657 Csa03g03663 Chy04g01700 Cme08g01481
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe05g00584 CCT 1 134 NADPH P450 reductases AT5G53560 77.6 1.9e-58 222.2
Cpe13g00327 CCT 1 138 NADPH P450 reductases AT5G53560 73.2 3.7e-54 208.0
Cpe08g00396 . 1 133 NADPH P450 reductases AT5G53560 69.2 1.3e-51 199.5
Cpe03g01589 . 1 149 NADPH P450 reductases AT5G53560 61.7 2.1e-49 192.2
Cpe12g00095 . 1 133 NADPH P450 reductases AT5G53560 62.4 5.4e-45 177.6
Cpe15g00137 . 4 131 NADPH P450 reductases AT5G53560 64.1 3.5e-44 174.9
Cpe05g00119 . 61 180 NADPH P450 reductases AT5G53560 59.5 2.6e-39 158.7
Cpe08g00396 . 1 132 NADPH P450 reductases AT5G48810 64.9 9.3e-48 186.8
Cpe12g00095 . 1 133 NADPH P450 reductases AT5G48810 62.2 3.9e-46 181.4
Cpe15g00137 . 2 132 NADPH P450 reductases AT5G48810 63.2 1.9e-45 179.1
Cpe03g01589 . 1 148 NADPH P450 reductases AT5G48810 58.0 1.3e-44 176.4
Cpe05g00584 CCT 1 134 NADPH P450 reductases AT5G48810 58.1 1.4e-43 172.9
Cpe13g00327 CCT 1 138 NADPH P450 reductases AT5G48810 55.0 6.5e-41 164.1
Cpe05g00119 . 61 181 NADPH P450 reductases AT5G48810 58.1 7.9e-39 157.1
Cpe08g00396 . 22 133 NADPH P450 reductases AT2G32720 83.0 4.3e-50 194.5
Cpe03g01589 . 22 149 NADPH P450 reductases AT2G32720 74.2 1.2e-47 186.4
Cpe12g00095 . 22 133 NADPH P450 reductases AT2G32720 75.9 6.0e-44 174.1
Cpe15g00137 . 21 132 NADPH P450 reductases AT2G32720 71.4 6.2e-41 164.1
Cpe05g00584 CCT 22 133 NADPH P450 reductases AT2G32720 66.1 5.2e-40 161.0
Cpe05g00119 . 83 181 NADPH P450 reductases AT2G32720 74.7 4.9e-38 154.5
Cpe11g00394 . 31 145 NADPH P450 reductases AT1G26340 61.3 3.8e-38 154.8
Cpe19g00231 . 2 281 NADPH P450 reductases AT5G17770 81.1 5.5e-132 467.6
Cpe08g01365 . 2 280 NADPH P450 reductases AT5G17770 79.3 4.8e-128 454.5
Cpe10g01086 . 5 276 NADPH P450 reductases AT5G17770 80.0 1.2e-126 449.9
Cpe16g00938 . 1 269 NADPH P450 reductases AT5G17770 65.3 1.0e-101 367.1
Cpe05g00584 CCT 1 134 NADPH P450 reductases AT5G53560 77.6 1.9e-58 222.2
Cpe13g00327 CCT 1 138 NADPH P450 reductases AT5G53560 73.2 3.7e-54 208.0
Cpe08g00396 . 1 133 NADPH P450 reductases AT5G53560 69.2 1.3e-51 199.5
Cpe03g01589 . 1 149 NADPH P450 reductases AT5G53560 61.7 2.1e-49 192.2
Cpe12g00095 . 1 133 NADPH P450 reductases AT5G53560 62.4 5.4e-45 177.6
Cpe15g00137 . 4 131 NADPH P450 reductases AT5G53560 64.1 3.5e-44 174.9
Cpe05g00119 . 61 180 NADPH P450 reductases AT5G53560 59.5 2.6e-39 158.7
Cpe08g00396 . 1 132 NADPH P450 reductases AT5G48810 64.9 9.3e-48 186.8
Cpe12g00095 . 1 133 NADPH P450 reductases AT5G48810 62.2 3.9e-46 181.4
Cpe15g00137 . 2 132 NADPH P450 reductases AT5G48810 63.2 1.9e-45 179.1
Cpe03g01589 . 1 148 NADPH P450 reductases AT5G48810 58.0 1.3e-44 176.4
Cpe05g00584 CCT 1 134 NADPH P450 reductases AT5G48810 58.1 1.4e-43 172.9
Cpe13g00327 CCT 1 138 NADPH P450 reductases AT5G48810 55.0 6.5e-41 164.1
Cpe05g00119 . 61 181 NADPH P450 reductases AT5G48810 58.1 7.9e-39 157.1
Cpe08g00396 . 22 133 NADPH P450 reductases AT2G32720 83.0 4.3e-50 194.5
Cpe03g01589 . 22 149 NADPH P450 reductases AT2G32720 74.2 1.2e-47 186.4
Cpe12g00095 . 22 133 NADPH P450 reductases AT2G32720 75.9 6.0e-44 174.1
Cpe15g00137 . 21 132 NADPH P450 reductases AT2G32720 71.4 6.2e-41 164.1
Cpe05g00584 CCT 22 133 NADPH P450 reductases AT2G32720 66.1 5.2e-40 161.0
Cpe05g00119 . 83 181 NADPH P450 reductases AT2G32720 74.7 4.9e-38 154.5
Cpe11g00394 . 31 145 NADPH P450 reductases AT1G26340 61.3 3.8e-38 154.8
Cpe19g00231 . 2 281 NADPH P450 reductases AT5G17770 81.1 5.5e-132 467.6
Cpe08g01365 . 2 280 NADPH P450 reductases AT5G17770 79.3 4.8e-128 454.5
Cpe10g01086 . 5 276 NADPH P450 reductases AT5G17770 80.0 1.2e-126 449.9
Cpe16g00938 . 1 269 NADPH P450 reductases AT5G17770 65.3 1.0e-101 367.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000880 3 3 2 3 3 2 4 3 2 3 3 3 4 3 3 4 3 4 4 2 3 2 2 3 2 1 1 3 5 3 86
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe10g01086 Cpe_Chr10 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0