Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g01100 ATGAGGGAAGAACACTCCAATTGGTTCTCGAGATGGGAAGAGGAGCTTCCATCTCCGGATGAATTGATGCCTCTTTCTCAAACCCTAATAACTCCCGATCTAGCTTTGGCTTTTGATATTCAGAATTCCAGTAATACCAGTCCGCCCTTGCCCTGCCCATCTCCCCCGCTTTCGAATCCTCTCCCTGGCTCCGGCAATGGAATTGCGCCCCCCAACTCGGCGGATTTCGGTGATTCCGCCGATTTGGGTTCTGGCGCTGCTAGCGACGAACCGGCTCGAACCCTCAAGCGGCCGCGTCTCGTTTGGACACCTCAACTCCATAAGCGATTCGTCGATGCTGTTGCTCATTTGGGTATCAAAAATGCCGTCCCCAAGACCATAATGCAGCTCATGAGTGTCGATGGCTTGACCAGAGAGAACGTTGCTAGCCATTTGCAGAAGTACCGCCTCTATCTCAAACGGATGCAGGGCTTGTCCAGCGGCGGCGGTGGTGGTGGTGGTGGTGGGTTGGTTGCTTCCTCGGACCCCACTGACCATTTGTTCGCTAGCTCCCCAGTTCCACCCCATTTGCTTCACTCAGCTCGCTCCACTTCAGACCATTTCTTGCCCTTTGTTCCAATGGCCACTTTACAGCAACACCACCATCACCAGCAGCATATGGCTGCTGCTGCTGCTGCTGCTGTCGCCGGGCATCCACAGCTCCAGCCGTCATATCATCGACAAGTCGGGCATTTCGGGTCGCCCCCGAATGGCCAGTTTGAGCATCCATTTTTAGCTAGACAATCCCAACCAGTCCATAGAATGGGTGCACCAGTGCATAACTCAATCCCTAATTACATTGAGGATTTGGAATCAGCCAATGCCAATGGAGGAAGAAAAGTTCTCACCTTATTCCCTACTGGGGATGATTGA 912 53.07 MREEHSNWFSRWEEELPSPDELMPLSQTLITPDLALAFDIQNSSNTSPPLPCPSPPLSNPLPGSGNGIAPPNSADFGDSADLGSGAASDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSSGGGGGGGGGLVASSDPTDHLFASSPVPPHLLHSARSTSDHFLPFVPMATLQQHHHHQQHMAAAAAAAVAGHPQLQPSYHRQVGHFGSPPNGQFEHPFLARQSQPVHRMGAPVHNSIPNYIEDLESANANGGRKVLTLFPTGDD 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7054606 7055517 - Cp4.1LG10g10650.1 Cpe10g01100 476637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g01100 303 MobiDBLite consensus disorder prediction 41 91 - -
Cpe10g01100 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 102 153 IPR017930 -
Cpe10g01100 303 MobiDBLite consensus disorder prediction 1 25 - -
Cpe10g01100 303 PANTHER HOMEODOMAIN-LIKE PROTEIN-RELATED 1 303 - -
Cpe10g01100 303 Pfam Myb-like DNA-binding domain 101 149 IPR001005 -
Cpe10g01100 303 SUPERFAMILY Homeodomain-like 94 154 IPR009057 -
Cpe10g01100 303 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 98 150 IPR006447 GO:0003677
Cpe10g01100 303 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 303 IPR044841 GO:0003700|GO:0006355
Cpe10g01100 303 Gene3D - 94 156 - -
Cpe10g01100 303 MobiDBLite consensus disorder prediction 1 18 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01219 Cpe-Chr2:11027138 Cpe10g01100 Cpe-Chr10:7054606 5.28E-40 dispersed
Cpe08g01347 Cpe-Chr8:9711536 Cpe10g01100 Cpe-Chr10:7054606 1.07E-121 dispersed
Cpe10g01100 Cpe-Chr10:7054606 Cpe19g00248 Cpe-Chr19:2031934 1.30E-159 dispersed
Cpe10g01100 Cpe-Chr10:7054606 Cpe03g00415 Cpe-Chr3:2320052 4.72E-109 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50170 PF00249 Myb_DNA-binding 2.20E-08 CL0123 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g01100 - - cmax:111467241 529.635