Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe10g01153 | ATGGCCATGGCTCCAGGAAGCAGTACCTGCAAAGAAGTAGTTGATTCTCATCCTTCAGTTTCAGGGCATGACATAGCAATGTCTAAATCAGAGAATAATTCTACATCTTCAAAAGTCCTACTTGGTTCGAGTGGGAAGCTTGGAGTTTATTCAACCAATGGCGTGCAAGAACTGCTCGAGTGCCCTGTCTGCACAAATCTGATGTACCCTCCAATTTACCAGTGCCCGAATGGCCACACGTTGTGCTCAAACTGCAAGATCAGAGTTAGCAACTGCTGCCCGACCTGTCGTCATGAACTCGGAAACATAAGGTGCTTGGCATTGGAGAAGGTAGCTGAGTCGCTGGAAATCCCCTGCAGATACCAGAATTTGGGTTGCCAAGATATTTTTCCTTACTACAGTAAGCTTAAGCATGAGCAACACTGTCGATTCCGTCCTTACAACTGCCCTTATGCTGGATCCGAGTGCTCGGTCACGGGCGACATCCCGTCTCTTGTTGCACATCTCAAAGATGATCACAAGGTTGACATGCACGACGGGTGTACCTTCAATCATCGCTATGTGAAATCAAATCCACACGAAGTTGAAAACGCTACATGGATGCTAACGGTTTTCAACTGCTTTGGAAGACAGTTCTGCTTGCATTTCGAGGCGTTCCAGCTAGGAACAGCGCCTGTTTACATGGCGTTCTTACGATTCATGGGCGAAGATAACGAAGCAAAGAAGTTCAGCTACAGTTTGGAGGTGGGTCACAACGGGCGAAAACTGATATGGCAAGGAATTCCGAGAGGCATCCGTGACAGTCACCGAAAAGTTCGTGACAGTCAAGATGGTCTCATCATTCAAAGAAACCTGGCACTGTATTTTTCGGGGGGAGAAAGACGAGAGCTGAAACTGAGAATCACGGGTCGAATATGGAAAGAAGAATGA | 930 | 47.1 | MAMAPGSSTCKEVVDSHPSVSGHDIAMSKSENNSTSSKVLLGSSGKLGVYSTNGVQELLECPVCTNLMYPPIYQCPNGHTLCSNCKIRVSNCCPTCRHELGNIRCLALEKVAESLEIPCRYQNLGCQDIFPYYSKLKHEQHCRFRPYNCPYAGSECSVTGDIPSLVAHLKDDHKVDMHDGCTFNHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGTAPVYMAFLRFMGEDNEAKKFSYSLEVGHNGRKLIWQGIPRGIRDSHRKVRDSQDGLIIQRNLALYFSGGERRELKLRITGRIWKEE | 309 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 8364181 | 8368286 | - | Cp4.1LG10g11930.1 | Cpe10g01153 | 476690 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe10g01153 | 309 | Pfam | Seven in absentia protein family | 103 | 302 | IPR018121 | GO:0005737|GO:0006511|GO:0007275 | |
Cpe10g01153 | 309 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE SINAT1-RELATED | 3 | 309 | - | - | |
Cpe10g01153 | 309 | SUPERFAMILY | TRAF domain-like | 114 | 306 | - | - | |
Cpe10g01153 | 309 | MobiDBLite | consensus disorder prediction | 1 | 37 | - | - | |
Cpe10g01153 | 309 | ProSiteProfiles | Zinc finger RING-type profile. | 61 | 97 | IPR001841 | - | |
Cpe10g01153 | 309 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 22 | 113 | IPR013083 | - | |
Cpe10g01153 | 309 | Gene3D | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 169 | 302 | IPR008974 | GO:0005515 | |
Cpe10g01153 | 309 | MobiDBLite | consensus disorder prediction | 23 | 37 | - | - | |
Cpe10g01153 | 309 | CDD | RING-HC_SIAHs | 59 | 97 | - | - | |
Cpe10g01153 | 309 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 114 | 168 | IPR013083 | - | |
Cpe10g01153 | 309 | ProSiteProfiles | Zinc finger SIAH-type profile. | 114 | 174 | IPR013010 | GO:0008270 | |
Cpe10g01153 | 309 | SUPERFAMILY | RING/U-box | 55 | 102 | - | - | |
Cpe10g01153 | 309 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE SIAH | 3 | 309 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe10g01153 | Cpe-Chr10:8364181 | Cpe09g00015 | Cpe-Chr9:86520 | 1.43E-151 | dispersed | |
Cpe10g01153 | Cpe-Chr10:8364181 | Cpe19g00084 | Cpe-Chr19:653947 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe10g01153 | K04506 | - | cpap:110811721 | 578.941 |