Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g01153 ATGGCCATGGCTCCAGGAAGCAGTACCTGCAAAGAAGTAGTTGATTCTCATCCTTCAGTTTCAGGGCATGACATAGCAATGTCTAAATCAGAGAATAATTCTACATCTTCAAAAGTCCTACTTGGTTCGAGTGGGAAGCTTGGAGTTTATTCAACCAATGGCGTGCAAGAACTGCTCGAGTGCCCTGTCTGCACAAATCTGATGTACCCTCCAATTTACCAGTGCCCGAATGGCCACACGTTGTGCTCAAACTGCAAGATCAGAGTTAGCAACTGCTGCCCGACCTGTCGTCATGAACTCGGAAACATAAGGTGCTTGGCATTGGAGAAGGTAGCTGAGTCGCTGGAAATCCCCTGCAGATACCAGAATTTGGGTTGCCAAGATATTTTTCCTTACTACAGTAAGCTTAAGCATGAGCAACACTGTCGATTCCGTCCTTACAACTGCCCTTATGCTGGATCCGAGTGCTCGGTCACGGGCGACATCCCGTCTCTTGTTGCACATCTCAAAGATGATCACAAGGTTGACATGCACGACGGGTGTACCTTCAATCATCGCTATGTGAAATCAAATCCACACGAAGTTGAAAACGCTACATGGATGCTAACGGTTTTCAACTGCTTTGGAAGACAGTTCTGCTTGCATTTCGAGGCGTTCCAGCTAGGAACAGCGCCTGTTTACATGGCGTTCTTACGATTCATGGGCGAAGATAACGAAGCAAAGAAGTTCAGCTACAGTTTGGAGGTGGGTCACAACGGGCGAAAACTGATATGGCAAGGAATTCCGAGAGGCATCCGTGACAGTCACCGAAAAGTTCGTGACAGTCAAGATGGTCTCATCATTCAAAGAAACCTGGCACTGTATTTTTCGGGGGGAGAAAGACGAGAGCTGAAACTGAGAATCACGGGTCGAATATGGAAAGAAGAATGA 930 47.1 MAMAPGSSTCKEVVDSHPSVSGHDIAMSKSENNSTSSKVLLGSSGKLGVYSTNGVQELLECPVCTNLMYPPIYQCPNGHTLCSNCKIRVSNCCPTCRHELGNIRCLALEKVAESLEIPCRYQNLGCQDIFPYYSKLKHEQHCRFRPYNCPYAGSECSVTGDIPSLVAHLKDDHKVDMHDGCTFNHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGTAPVYMAFLRFMGEDNEAKKFSYSLEVGHNGRKLIWQGIPRGIRDSHRKVRDSQDGLIIQRNLALYFSGGERRELKLRITGRIWKEE 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8364181 8368286 - Cp4.1LG10g11930.1 Cpe10g01153 476690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g01153 309 Pfam Seven in absentia protein family 103 302 IPR018121 GO:0005737|GO:0006511|GO:0007275
Cpe10g01153 309 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINAT1-RELATED 3 309 - -
Cpe10g01153 309 SUPERFAMILY TRAF domain-like 114 306 - -
Cpe10g01153 309 MobiDBLite consensus disorder prediction 1 37 - -
Cpe10g01153 309 ProSiteProfiles Zinc finger RING-type profile. 61 97 IPR001841 -
Cpe10g01153 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 113 IPR013083 -
Cpe10g01153 309 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 169 302 IPR008974 GO:0005515
Cpe10g01153 309 MobiDBLite consensus disorder prediction 23 37 - -
Cpe10g01153 309 CDD RING-HC_SIAHs 59 97 - -
Cpe10g01153 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 168 IPR013083 -
Cpe10g01153 309 ProSiteProfiles Zinc finger SIAH-type profile. 114 174 IPR013010 GO:0008270
Cpe10g01153 309 SUPERFAMILY RING/U-box 55 102 - -
Cpe10g01153 309 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 3 309 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g01153 Cpe-Chr10:8364181 Cpe09g00015 Cpe-Chr9:86520 1.43E-151 dispersed
Cpe10g01153 Cpe-Chr10:8364181 Cpe19g00084 Cpe-Chr19:653947 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g01153 K04506 - cpap:110811721 578.941