Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g01159 ATGTCTCACAATTGCTTCTCGTATCCCTACCCGAGCTCGATCCCGAGCCTGAACCCACCTCCACCGTCATCTCCGCCGCTCCGAGAGGCTCTTCCGCTACTCAGGCTAATGTCTCCTCCCGAGCAGAGACAAGAACAAGAAGAAGACGACGATGATGGAGGTAGCAAAGATGACAACGCGTCGGTCACCGTGGCGTTGCACATAGGGCTACCAAACCCTAGCCCAGCTGAAATAGCTTCCTTGATGTGTGGCTCTTCATCTGAGATTGATCAAGAACATGAGTTTGGACAGTCCACCAAAACCCTAATTAAGGGACAGTATTGGATCCCAACTCCTTCTCAAATCCTCATTGGTCCTACTCAATTCTCTTGCCCTGTTTGCTTCAAAACCTTCAATAGATACAACAACATGCAGATGCACATGTGGGGGCATGGATCACAATACAGAAAAGGCCCCGAGTCCCTCCGGGGCACGCAGCCAACGGGCATGCTAAGGCTTCCTTGCTACTGCTGCGCCCCGGGGTGCCGCAACAACATCGACCATCCCCGTGCCAAACCATTGAAAGACTTCAGAACTCTTCAAACACATTACAAGCGCAAGCACGGGCTAAAGCCCTTCATGTGCCGAAAGTGTGGCAAAGCGTTCGCCGTGCGTGGCGACTGGCGAACGCACGAGAAGAATTGTGGTAAGCTTTGGTACTGCATTTGTGGCTCGGATTTTAAGCACAAGCGCTCGCTCAAGGACCATGTCAAGGCCTTCGGTAATGACCACGCTGCCTACGGTGGAGGCGGGATCGATGTGTTCGGAGATGAAGATGATGAGCCTGCTTCTGAAGTCGAGCAAGATAACGATGAACGATGA 861 52.38 MSHNCFSYPYPSSIPSLNPPPPSSPPLREALPLLRLMSPPEQRQEQEEDDDDGGSKDDNASVTVALHIGLPNPSPAEIASLMCGSSSEIDQEHEFGQSTKTLIKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGLKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHVKAFGNDHAAYGGGGIDVFGDEDDEPASEVEQDNDER 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8500987 8503194 + Cp4.1LG10g11900.1 Cpe10g01159 476696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g01159 286 PANTHER ZINC FINGER PROTEIN WIP2 19 284 IPR043584 GO:0003700|GO:0010468
Cpe10g01159 286 Gene3D Classic Zinc Finger 184 259 - -
Cpe10g01159 286 SUPERFAMILY beta-beta-alpha zinc fingers 118 144 IPR036236 -
Cpe10g01159 286 ProSiteProfiles Zinc finger C2H2 type domain profile. 122 149 IPR013087 -
Cpe10g01159 286 MobiDBLite consensus disorder prediction 13 28 - -
Cpe10g01159 286 SUPERFAMILY beta-beta-alpha zinc fingers 188 226 IPR036236 -
Cpe10g01159 286 ProSiteProfiles Zinc finger C2H2 type domain profile. 206 226 IPR013087 -
Cpe10g01159 286 MobiDBLite consensus disorder prediction 267 286 - -
Cpe10g01159 286 MobiDBLite consensus disorder prediction 266 286 - -
Cpe10g01159 286 MobiDBLite consensus disorder prediction 1 59 - -
Cpe10g01159 286 PANTHER ZINC FINGER PROTEIN WIP2-LIKE 19 284 - -
Cpe10g01159 286 Gene3D Classic Zinc Finger 121 144 - -
Cpe10g01159 286 SMART c2h2final6 122 144 IPR013087 -
Cpe10g01159 286 SMART c2h2final6 206 226 IPR013087 -
Cpe10g01159 286 ProSitePatterns Zinc finger C2H2 type domain signature. 124 144 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00391 Cpe-Chr3:2114959 Cpe10g01159 Cpe-Chr10:8500987 9.14E-136 dispersed
Cpe05g00504 Cpe-Chr5:2977391 Cpe10g01159 Cpe-Chr10:8500987 6.91E-116 dispersed
Cpe08g01384 Cpe-Chr8:9954659 Cpe10g01159 Cpe-Chr10:8500987 8.00E-132 dispersed
Cpe10g01159 Cpe-Chr10:8500987 Cpe16g00887 Cpe-Chr16:8355545 1.90E-130 dispersed
Cpe20g00697 Cpe-Chr20:5474374 Cpe10g01159 Cpe-Chr10:8500987 1.76E-104 transposed
Cpe10g01159 Cpe-Chr10:8500987 Cpe19g00081 Cpe-Chr19:598309 1.44E-152 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50172 None None None None Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g01159 - - bhj:120074233 491.5