Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe10g01159 | ATGTCTCACAATTGCTTCTCGTATCCCTACCCGAGCTCGATCCCGAGCCTGAACCCACCTCCACCGTCATCTCCGCCGCTCCGAGAGGCTCTTCCGCTACTCAGGCTAATGTCTCCTCCCGAGCAGAGACAAGAACAAGAAGAAGACGACGATGATGGAGGTAGCAAAGATGACAACGCGTCGGTCACCGTGGCGTTGCACATAGGGCTACCAAACCCTAGCCCAGCTGAAATAGCTTCCTTGATGTGTGGCTCTTCATCTGAGATTGATCAAGAACATGAGTTTGGACAGTCCACCAAAACCCTAATTAAGGGACAGTATTGGATCCCAACTCCTTCTCAAATCCTCATTGGTCCTACTCAATTCTCTTGCCCTGTTTGCTTCAAAACCTTCAATAGATACAACAACATGCAGATGCACATGTGGGGGCATGGATCACAATACAGAAAAGGCCCCGAGTCCCTCCGGGGCACGCAGCCAACGGGCATGCTAAGGCTTCCTTGCTACTGCTGCGCCCCGGGGTGCCGCAACAACATCGACCATCCCCGTGCCAAACCATTGAAAGACTTCAGAACTCTTCAAACACATTACAAGCGCAAGCACGGGCTAAAGCCCTTCATGTGCCGAAAGTGTGGCAAAGCGTTCGCCGTGCGTGGCGACTGGCGAACGCACGAGAAGAATTGTGGTAAGCTTTGGTACTGCATTTGTGGCTCGGATTTTAAGCACAAGCGCTCGCTCAAGGACCATGTCAAGGCCTTCGGTAATGACCACGCTGCCTACGGTGGAGGCGGGATCGATGTGTTCGGAGATGAAGATGATGAGCCTGCTTCTGAAGTCGAGCAAGATAACGATGAACGATGA | 861 | 52.38 | MSHNCFSYPYPSSIPSLNPPPPSSPPLREALPLLRLMSPPEQRQEQEEDDDDGGSKDDNASVTVALHIGLPNPSPAEIASLMCGSSSEIDQEHEFGQSTKTLIKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGLKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHVKAFGNDHAAYGGGGIDVFGDEDDEPASEVEQDNDER | 286 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 8500987 | 8503194 | + | Cp4.1LG10g11900.1 | Cpe10g01159 | 476696 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe10g01159 | 286 | PANTHER | ZINC FINGER PROTEIN WIP2 | 19 | 284 | IPR043584 | GO:0003700|GO:0010468 | |
Cpe10g01159 | 286 | Gene3D | Classic Zinc Finger | 184 | 259 | - | - | |
Cpe10g01159 | 286 | SUPERFAMILY | beta-beta-alpha zinc fingers | 118 | 144 | IPR036236 | - | |
Cpe10g01159 | 286 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 122 | 149 | IPR013087 | - | |
Cpe10g01159 | 286 | MobiDBLite | consensus disorder prediction | 13 | 28 | - | - | |
Cpe10g01159 | 286 | SUPERFAMILY | beta-beta-alpha zinc fingers | 188 | 226 | IPR036236 | - | |
Cpe10g01159 | 286 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 206 | 226 | IPR013087 | - | |
Cpe10g01159 | 286 | MobiDBLite | consensus disorder prediction | 267 | 286 | - | - | |
Cpe10g01159 | 286 | MobiDBLite | consensus disorder prediction | 266 | 286 | - | - | |
Cpe10g01159 | 286 | MobiDBLite | consensus disorder prediction | 1 | 59 | - | - | |
Cpe10g01159 | 286 | PANTHER | ZINC FINGER PROTEIN WIP2-LIKE | 19 | 284 | - | - | |
Cpe10g01159 | 286 | Gene3D | Classic Zinc Finger | 121 | 144 | - | - | |
Cpe10g01159 | 286 | SMART | c2h2final6 | 122 | 144 | IPR013087 | - | |
Cpe10g01159 | 286 | SMART | c2h2final6 | 206 | 226 | IPR013087 | - | |
Cpe10g01159 | 286 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 124 | 144 | IPR013087 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe03g00391 | Cpe-Chr3:2114959 | Cpe10g01159 | Cpe-Chr10:8500987 | 9.14E-136 | dispersed | |
Cpe05g00504 | Cpe-Chr5:2977391 | Cpe10g01159 | Cpe-Chr10:8500987 | 6.91E-116 | dispersed | |
Cpe08g01384 | Cpe-Chr8:9954659 | Cpe10g01159 | Cpe-Chr10:8500987 | 8.00E-132 | dispersed | |
Cpe10g01159 | Cpe-Chr10:8500987 | Cpe16g00887 | Cpe-Chr16:8355545 | 1.90E-130 | dispersed | |
Cpe20g00697 | Cpe-Chr20:5474374 | Cpe10g01159 | Cpe-Chr10:8500987 | 1.76E-104 | transposed | |
Cpe10g01159 | Cpe-Chr10:8500987 | Cpe19g00081 | Cpe-Chr19:598309 | 1.44E-152 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
50172 | None | None | None | None | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe10g01159 | - | - | bhj:120074233 | 491.5 |