Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g01185 ATGGGAACCCCGGAATTCCCTAATCTCGGGCAGCATTGCAACTTGGAAGATTGTAAGCAGATCGATTTCTTGCCCTTTACTTGCGATTGCTGTCGCCAGGTCTTTTGTTTGGAGCATCGTAGCTACAATAGACATAGTTGTCCGAAAGCAGATAGACGGGATGTCACCGTCGTCATTTGTCCGCTGTGTGCCAAAGGAGTTCGTCTCGTCCCAGATCAAGATCCCAACATTACATGGGAGATACATGTTAACACTGAATGTGACCCTTCAAATTATGAAAAAGTCACAAAGAAGAAAAAATGCCCTGTACCAGGCTGTAGGGAGTCGTTAACGTTTTCAAACACGATCAAGTGCCGGGACTGCTCGGTAGACCATTGTTTGAAACACCGTTTTGGTCTCGATCATAAGTGTCCTGGTCCGAAAAAACCCGAACCAGCAGGCTTTCCTTTTGTTGGTGTTTTAAGTAGAAGTAAACAAGAAGAGAATGGACCTAAGAAAGCATTGCCTAACACAGCTTCCTCTAATTGGACTACAGCCCTCCTTAATGTAGCCTCGTCTTTTAAAGCCTCATGGAAAGCAACAGGCAACAACAGCAATGGAAATGGACATGTTGAGCAATGTCCACAATGTAGTGCTAAGTTTTCGTTGGTTTCGTCTCTAGTCGAGCATGTAAAAAAAGTCCATGAAAGCGGTGTCAATCGACCTGGGGCGAAGAAGGTAGTAATCGATGCTTGTCCAAAGTGTAGCAGAGGGTTCATCGATCCTGTTGCCCTCGTCGAGCATATTGAGAAGGATCATGGTGGCGTCCAAAGTGTAGCAGAGAATTTATCGATCCTATTGCCCTTGTCGAGCATATTGAGAAAGATAGCGGTGGTACTTCAAGAGCTTGAGCATATGTATCAGAAAATCCTATTGCCCTCCTCGAGCATATTGAGAGAGATCATGGTGGTCTTTTGTTTGGAGCATCGTAGCTACAATAGACATAGTTGTCCGAAAGCAGATAGACGGGATGTCACCGTCGTCATTTGTCCGCTGTGTGCCAAAGGAGTTCGTCTCGTCCCAGATCAAGATCCCAACATTACATGGGAGATACATGTTAACACTGAATGTGACCCTTCAAATTATGAAAAAGTCACAAAGAAGAAAAAATGCCCTGTACCAGGCTGTAGGGAGTCGTTAACGTTTTCAAACACGATCAAGTGCCGGGACTGCTCGGTAGACCATTGTTTGAAACACCGTTTTGGTCTCGATCATAAGTGTCCTGGTCCGAAAAAACCCGAACCAGCAGGCTTTCCTTTTGTTGGTGTTTTAAGTAGAAGTAAACAAGAAGAGAATGGACCTAAGAAAGCATTGCCTAACACAGCTTCCTCTAATTGGACTACAGCCCTCCTTAATGTAGCCTCGTCTTTTAAAGCCTCATGGAAAGCAACAGGCAACAACAGCAATGGAAATGGACATGTTGAGCAATGTCCACAATGTAGTGCTAAGTTTTCGTTGGTTTCGTCTCTAGTCGAGCATGTAAAAAAAGTCCATGAAAGCGGTGTCAATCGACCTGGGGCGAAGAAGGTAGTAATCGATGCTTGTCCAAAGTGTAGCAGAGGGTTCATCGATCCTGTTGCCCTCGTCGAGCATATTGAGAAGGATCATGGTGGTACTTCAAAAGCTTGA 1668 44.9 MGTPEFPNLGQHCNLEDCKQIDFLPFTCDCCRQVFCLEHRSYNRHSCPKADRRDVTVVICPLCAKGVRLVPDQDPNITWEIHVNTECDPSNYEKVTKKKKCPVPGCRESLTFSNTIKCRDCSVDHCLKHRFGLDHKCPGPKKPEPAGFPFVGVLSRSKQEENGPKKALPNTASSNWTTALLNVASSFKASWKATGNNSNGNGHVEQCPQCSAKFSLVSSLVEHVKKVHESGVNRPGAKKVVIDACPKCSRGFIDPVALVEHIEKDHGGVQSVAENLSILLPLSSILRKIAVVLQELEHMYQKILLPSSSILREIMVVFCLEHRSYNRHSCPKADRRDVTVVICPLCAKGVRLVPDQDPNITWEIHVNTECDPSNYEKVTKKKKCPVPGCRESLTFSNTIKCRDCSVDHCLKHRFGLDHKCPGPKKPEPAGFPFVGVLSRSKQEENGPKKALPNTASSNWTTALLNVASSFKASWKATGNNSNGNGHVEQCPQCSAKFSLVSSLVEHVKKVHESGVNRPGAKKVVIDACPKCSRGFIDPVALVEHIEKDHGGTSKA 555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8789436 8794770 + Cp4.1LG10g11650.1 Cpe10g01185 476722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g01185 555 ProSiteProfiles Zinc finger C2H2 type domain profile. 243 271 IPR013087 -
Cpe10g01185 555 PANTHER ZINC FINGER AN1 AND C2H2 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 13 316 477 - -
Cpe10g01185 555 SMART c2h2final6 243 266 IPR013087 -
Cpe10g01185 555 SMART c2h2final6 526 549 IPR013087 -
Cpe10g01185 555 SMART c2h2final6 488 511 IPR013087 -
Cpe10g01185 555 SMART c2h2final6 205 228 IPR013087 -
Cpe10g01185 555 SMART AN1_Zf_4 384 425 IPR000058 GO:0008270
Cpe10g01185 555 SMART AN1_Zf_4 101 142 IPR000058 GO:0008270
Cpe10g01185 555 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270
Cpe10g01185 555 ProSitePatterns Zinc finger C2H2 type domain signature. 207 228 IPR013087 -
Cpe10g01185 555 SUPERFAMILY AN1-like Zinc finger 376 427 IPR035896 -
Cpe10g01185 555 PANTHER ZINC FINGER AN1 AND C2H2 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 13 1 194 - -
Cpe10g01185 555 Gene3D - 81 147 IPR035896 -
Cpe10g01185 555 Gene3D - 364 430 IPR035896 -
Cpe10g01185 555 Pfam AN1-like Zinc finger 101 141 IPR000058 GO:0008270
Cpe10g01185 555 Pfam AN1-like Zinc finger 13 51 IPR000058 GO:0008270
Cpe10g01185 555 Pfam AN1-like Zinc finger 384 424 IPR000058 GO:0008270
Cpe10g01185 555 PANTHER ZINC FINGER AN1 AND C2H2 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 13 479 555 - -
Cpe10g01185 555 ProSiteProfiles Zinc finger C2H2 type domain profile. 205 228 IPR013087 -
Cpe10g01185 555 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 196 270 - -
Cpe10g01185 555 ProSitePatterns Zinc finger C2H2 type domain signature. 490 511 IPR013087 -
Cpe10g01185 555 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270
Cpe10g01185 555 ProSiteProfiles Zinc finger C2H2 type domain profile. 526 554 IPR013087 -
Cpe10g01185 555 ProSiteProfiles Zinc finger AN1-type profile. 378 428 IPR000058 GO:0008270
Cpe10g01185 555 PANTHER ZINC FINGER AN1 AND C2H2 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 13 196 270 - -
Cpe10g01185 555 Gene3D Classic Zinc Finger 181 272 - -
Cpe10g01185 555 Gene3D Classic Zinc Finger 464 554 - -
Cpe10g01185 555 ProSiteProfiles Zinc finger C2H2 type domain profile. 488 511 IPR013087 -
Cpe10g01185 555 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270
Cpe10g01185 555 ProSitePatterns Zinc finger C2H2 type domain signature. 528 549 IPR013087 -
Cpe10g01185 555 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 1 194 - -
Cpe10g01185 555 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 479 555 - -
Cpe10g01185 555 ProSitePatterns Zinc finger C2H2 type domain signature. 245 266 IPR013087 -
Cpe10g01185 555 SUPERFAMILY AN1-like Zinc finger 93 144 IPR035896 -
Cpe10g01185 555 Gene3D - 2 59 IPR035896 -
Cpe10g01185 555 SUPERFAMILY AN1-like Zinc finger 6 50 IPR035896 -
Cpe10g01185 555 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 316 477 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00546 Cpe-Chr3:3199642 Cpe10g01185 Cpe-Chr10:8789436 3.63E-15 dispersed
Cpe10g01185 Cpe-Chr10:8789436 Cpe19g00058 Cpe-Chr19:441424 1.28E-132 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50174 PF01428 zf-AN1 1.60E-07 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g01185 - - cpep:111803780 512.686