Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g01188 ATGGCCTTTTTGTGTTGTTATCTCTCCATTTTTCTTGGAATTCTTTTCAACTCCCAGTTTCTGGGAGCTGTTCTTGATGATGAAATCACCATGTCCGCCATTAGAGAGGAGCTTCAAGTTCTTGAGTGGAGCTCCAACATCTCTGAGTACTGTTCTTGGAAAGGTGTTCATTGTGGTTTGAATCATTCCATGGTTGAAGCTCTTGATCTTTCAGGTCATTCTCTTAGAGGTAATCCAACACTGATTTCTAAGCTCAAAGCTCTGAAATGGCTTGATCTATCCTACAATGACTTCCACGGCGACGTCCCGTCGAGTTTCGCAACCTTATCCGAGCTCGAATTCCTTGATTTGTCTTTGAATAAGTTTGATGGTTCGATCCCGCCCGAGTTTGGTGGTCTCAAGAACCTCAAATCATTGAACCTTTCCAATAATCTTCTTGTGGGAGAAATTCCTAATGAGCTTCAAGGATTAGAGAAATTGGAGGATTTTCAAGTTTCTAGCAATAGGTTGAATGGTTCAATTCCAAGTTGGGTTGGAAATTTGAGCCATCTAAGAGTTTTTACAGCTTATGAGAATGACTTTGTTGGTGTAATTCCTGATAATCTCGGTTCGGTTTCCGAGCTCCATGTGTTGAATCTTCATACCAATAGGCTTGAAGGCTCGATTCCTCGAAGTATTTTCGGTTCGGGGAAGCTTGAGATTTTGGTTCTTACACAAAACAGATTGACTGGCTATCTTCCTGAAGAGATAGGTAACTGTAAAAGCCTTACGAGCGTTCGAATTGGGAACAATGATCTCGTTGGTTCGATACCTCCAGCCATTGGCAATGTCAGTAGCCTTGCTTACTTTGAAGTGGATAACAATCACCTTTCGGGCGACATTACGTCTTGGATTTCACGGTGCTCGAATCTCACTCTGCTGAATCTAGCATCGAACGAGTTCACCGGGGTGATTCCTCATGAACTCGGAGAGCTGGTGAATCTGCAGGAGCTTATTCTTTCCGGTAATAGCTTGTATGGCGACATTCCTAGATCGATGCTCCGGTGCAAGAATCTCAACAAGCTCGATTTAAGCAGCAATCGATTTAATGGTACTATTCCTTCAGATATCTGTAATATATCAAGATTGCAGTACTTACTTTTGGAACAGAACTCAATAAAAGGAGAGATACCTAAAGAGATTGGAAAATGTACAAAGCTTCTCGACTTACGACTCGGTAGTAACTACCTAACTGGAACCGTCCCTTCCGAGATCGGTCGTATTAAGAACTTGCAGATAGCTTTGAACTTGAGCTTCAATCATCTAAACGGACCAGTGCCTACGGAGTTGGGGGAACTTGATAAACTGGTTTCTTTAGATTTATCGAACAATCGTCTCTCGGGCGATATCCCGTCTGAGCTTAAGGGCATGTTAAGCTTGATAGACGTGAATTTTTCGAATAATCTGCTTACTGGTTCGATTCCTTTCTTTGTTCCATTCCAGAAAACTGCAAGTTCCAGCTTTCTGGGAAACAAAGGCCTTTGCGGGGCTCCATTAAGCGTTACGTGTAAAAATTCGATTGGTTCGTACACTCGAGATTACCATCAAAAGGTCTCGTACAAGATCATACTAGCTGTCATCGGTTCCGGGCTGGCTGTTTTCGTATCGGTTAGTATAGTTGTTTTACTCTTTGTGACGAAAGAAAAGCAGGAAAAGGCAGGAAAGTCTTCAAGAGCTGTAGATGATGAAATCATCAAGGATCATCCAACCATAATAGCTGGAAATGTCTTTGACGATAATCTCCGACAGGAGTTAGATCTCGATGCGGTCGTGAAAGCAACGTTTAAGGATTCAAACAAGCTCATATTTGGGACATTTAGTACTGTTTATAAGGCGGTCGTGCCTTCGGGGATGATCGTATCGGTTAAGAGACTAAAATCGATGGATAAGACGATCGTTCATCATCAAAGTAAGATGATCAGAGAGCTCGAAAGGCTTGGCAAACTTAGCCATGCTAATCTTTTGCAACTTATTGGGTATGTTATATACGAAGACGTGGCTCTGTTGCTTCATCGTTACTTACCGAACGGGACATTGGCTCGGCTTCTTCACGAGTCTACGAAACAACCCGAATACGAACCCGATTGGCCCACGAGATTTTCGATCGCCGTTGGAGCGGCAGAAGGGCTAGCTTTCCTTCATCATGTGGCTATAATCCATCTTGATATTTCATCATCCAATATTCTTTTGGATGCAAACTTCAAGCCTTTGGTTGGAGAGGTTGAGATATCAAAACTTTTAGATCCATCAAGAGGCACTGCTAGTATTAGTGCCATTGCAGGTTCATTTGGTTATATTCCACCAGAATATGCGTATACAATGCAAGTTACGGCCCCAGGAAACGTTTATAGCTACGGTGTCGTTTTGCTCGAGATCCTCACGACTAGAATGCCAGTGGATGAGGAGTTTGGTGAAGGAGTAGACTTGGTGAAGTGGGTGCTTAGTGCTCCTTCACGAGGCGAGACACCCGAACAGATACTCGATTCCCGGCTGAGCACGGTGTCGTTCGGGTGGAGGAAGGAGATGCTTGCAGCTCTCAAGATTGCATTGCTCTGTACTGATAGCATACCAGCCAAAAGGCCAAAAATGAAGAAAGTGGTGGAAATGCTTATGGAGATCAAGCAAAATTGA 2670 43.3 MAFLCCYLSIFLGILFNSQFLGAVLDDEITMSAIREELQVLEWSSNISEYCSWKGVHCGLNHSMVEALDLSGHSLRGNPTLISKLKALKWLDLSYNDFHGDVPSSFATLSELEFLDLSLNKFDGSIPPEFGGLKNLKSLNLSNNLLVGEIPNELQGLEKLEDFQVSSNRLNGSIPSWVGNLSHLRVFTAYENDFVGVIPDNLGSVSELHVLNLHTNRLEGSIPRSIFGSGKLEILVLTQNRLTGYLPEEIGNCKSLTSVRIGNNDLVGSIPPAIGNVSSLAYFEVDNNHLSGDITSWISRCSNLTLLNLASNEFTGVIPHELGELVNLQELILSGNSLYGDIPRSMLRCKNLNKLDLSSNRFNGTIPSDICNISRLQYLLLEQNSIKGEIPKEIGKCTKLLDLRLGSNYLTGTVPSEIGRIKNLQIALNLSFNHLNGPVPTELGELDKLVSLDLSNNRLSGDIPSELKGMLSLIDVNFSNNLLTGSIPFFVPFQKTASSSFLGNKGLCGAPLSVTCKNSIGSYTRDYHQKVSYKIILAVIGSGLAVFVSVSIVVLLFVTKEKQEKAGKSSRAVDDEIIKDHPTIIAGNVFDDNLRQELDLDAVVKATFKDSNKLIFGTFSTVYKAVVPSGMIVSVKRLKSMDKTIVHHQSKMIRELERLGKLSHANLLQLIGYVIYEDVALLLHRYLPNGTLARLLHESTKQPEYEPDWPTRFSIAVGAAEGLAFLHHVAIIHLDISSSNILLDANFKPLVGEVEISKLLDPSRGTASISAIAGSFGYIPPEYAYTMQVTAPGNVYSYGVVLLEILTTRMPVDEEFGEGVDLVKWVLSAPSRGETPEQILDSRLSTVSFGWRKEMLAALKIALLCTDSIPAKRPKMKKVVEMLMEIKQN 889
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8803633 8807399 - Cp4.1LG10g11550.1 Cpe10g01188 476725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g01188 889 Pfam Protein kinase domain 610 817 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe10g01188 889 SUPERFAMILY L domain-like 252 513 - -
Cpe10g01188 889 SMART LRR_typ_2 325 349 IPR003591 -
Cpe10g01188 889 SMART LRR_typ_2 446 469 IPR003591 -
Cpe10g01188 889 SMART LRR_typ_2 205 229 IPR003591 -
Cpe10g01188 889 SMART LRR_typ_2 157 181 IPR003591 -
Cpe10g01188 889 SMART LRR_typ_2 373 397 IPR003591 -
Cpe10g01188 889 SMART LRR_typ_2 85 108 IPR003591 -
Cpe10g01188 889 SMART LRR_typ_2 133 156 IPR003591 -
Cpe10g01188 889 SMART LRR_typ_2 109 132 IPR003591 -
Cpe10g01188 889 ProSitePatterns Tyrosine protein kinases specific active-site signature. 731 743 IPR008266 GO:0004672|GO:0006468
Cpe10g01188 889 Pfam Leucine rich repeat 130 170 IPR001611 GO:0005515
Cpe10g01188 889 Pfam Leucine rich repeat 279 338 IPR001611 GO:0005515
Cpe10g01188 889 SUPERFAMILY L domain-like 43 292 - -
Cpe10g01188 889 Pfam Leucine Rich Repeat 448 469 IPR001611 GO:0005515
Cpe10g01188 889 CDD STKc_IRAK 617 886 - -
Cpe10g01188 889 Gene3D Ribonuclease Inhibitor 168 228 IPR032675 -
Cpe10g01188 889 Gene3D Ribonuclease Inhibitor 231 519 IPR032675 -
Cpe10g01188 889 Gene3D Phosphorylase Kinase; domain 1 578 686 - -
Cpe10g01188 889 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 1 886 - -
Cpe10g01188 889 SUPERFAMILY Protein kinase-like (PK-like) 605 885 IPR011009 -
Cpe10g01188 889 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE TYROSINE-PROTEIN KINASE PXC3 1 886 - -
Cpe10g01188 889 Gene3D Ribonuclease Inhibitor 28 167 IPR032675 -
Cpe10g01188 889 ProSiteProfiles Protein kinase domain profile. 608 889 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe10g01188 889 Gene3D Transferase(Phosphotransferase) domain 1 687 889 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00669 Cpe-Chr5:4082738 Cpe10g01188 Cpe-Chr10:8803633 4.48E-102 dispersed
Cpe10g01188 Cpe-Chr10:8803633 Cpe04g01569 Cpe-Chr4:12287161 1.06E-135 dispersed
Cpe02g00927 Cpe-Chr2:7475334 Cpe10g01188 Cpe-Chr10:8803633 2.21E-39 transposed
Cpe10g01188 Cpe-Chr10:8803633 Cpe19g00055 Cpe-Chr19:431580 1.52E-77 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62690 PF00069 Pkinase 1.20E-27 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g01188 - - csv:101215786 1548.1