Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g01202 ATGGGAAGAGGCAGAGTAGAGATCAAGAAGATTGAGAATATCAACAGCCGACAAGTTACATTCTCAAAACGCCGAAATGGGTTGATGAAAAAGGCCAAAGAATTGTCGGTTCTTTGTGATGCTGAGGTCGCCATTGTTGTCTTCTCCAGCACTGGAAGACTTTATGAATTCTCCAGTACTAGCATGGAACATACACTTTCAAGGTACAGAGGACAGGGCATGGAGTTGGATTTTCCAAGAGAGACTTTGGACCATCCAACACAACTGCCACCATCGGATTCTGATGCGAAGTCATCCGAAGACGAGTTCGTAAAGCTGAAGTTAACGTACATGCAGATGAGAGGGCAAGAACTGGATAGTTTGAGCTTTAGAGAGCTACAAAACTTAGAAAATCAATTGCGGGAAGGGATCGTATCGATCAAAGACAAGAAGGAGTCATTGCTTTTGGAGCAGCTCCAAAGGTGTAGGTCGCAGGGGGAAGTAGTCATTTCCGAGAACGAGACACTGCGAAAACAGGCTAGTTTTCGGCTCCTTGAGGAGTTTCAGCAGAGAAATAATACACCACTTTTGGAGTCGAGCCCGCTTCAGAGATCGTACTTTTCGGATTCGAAAACCGCTTCTACCAACGAGACTGAGGCCGAGACTGAGGCCGAGGAAAATGACTGCTCGGAAATTTCCTTGCATCTGGGGTAA 693 46.03 MGRGRVEIKKIENINSRQVTFSKRRNGLMKKAKELSVLCDAEVAIVVFSSTGRLYEFSSTSMEHTLSRYRGQGMELDFPRETLDHPTQLPPSDSDAKSSEDEFVKLKLTYMQMRGQELDSLSFRELQNLENQLREGIVSIKDKKESLLLEQLQRCRSQGEVVISENETLRKQASFRLLEEFQQRNNTPLLESSPLQRSYFSDSKTASTNETEAETEAEENDCSEISLHLG 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8964083 8968389 - Cp4.1LG10g11400.1 Cpe10g01202 476739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g01202 230 PANTHER MADS BOX PROTEIN 1 230 - -
Cpe10g01202 230 Coils Coil 126 146 - -
Cpe10g01202 230 Gene3D - 13 77 IPR036879 GO:0003677|GO:0046983
Cpe10g01202 230 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL15 1 230 - -
Cpe10g01202 230 MobiDBLite consensus disorder prediction 80 99 - -
Cpe10g01202 230 ProSiteProfiles K-box domain profile. 89 184 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cpe10g01202 230 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cpe10g01202 230 CDD MADS_MEF2_like 2 70 IPR033896 GO:0000977|GO:0045944
Cpe10g01202 230 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cpe10g01202 230 MobiDBLite consensus disorder prediction 187 230 - -
Cpe10g01202 230 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cpe10g01202 230 MobiDBLite consensus disorder prediction 187 210 - -
Cpe10g01202 230 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cpe10g01202 230 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cpe10g01202 230 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cpe10g01202 230 Pfam K-box region 101 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cpe10g01202 230 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cpe10g01202 230 SUPERFAMILY SRF-like 2 71 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01566 Cpe-Chr2:13262616 Cpe10g01202 Cpe-Chr10:8964083 1.37E-49 dispersed
Cpe10g01202 Cpe-Chr10:8964083 Cpe03g01699 Cpe-Chr3:12926741 1.26E-40 dispersed
Cpe10g01202 Cpe-Chr10:8964083 Cpe02g00486 Cpe-Chr2:2793523 6.84E-40 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50176 PF01486 K-box 3.80E-13 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g01202 - - cmax:111467266 407.142