Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g01213 ATGGCGGATTACGATCTAACTCCACGAATTGCGCCGAATCTGGACCGCCATCTTGTTTTCCCTCTCCTTGAGTTTCTTCAAGAGAGGCAGCTTTACCCCGACGAGCAGATCCTCAAGGCCAAGATCGAACTTCTCAACAAAACCAACATGGTTGATTACGCCATGGACATCCATAAGTCGCTGAGGGCGGAAGTCGTGGGGAGGCTTAAAGCTTTGGAGGAGTCTGCTGCGCCGCTTGTTACTTTTCTGCAGAATCCTGCTGCTGTTCAGGAATTGAGGGCTGATAAGCAGTACAATCTTCAAATGCTTAATGATCGTTATCAGAATTTCTCGTCGCATATGAATCAAGTGCAAAGCAGAATATGGTTGATGCATTGGAGCCTCTTCATTTTTTTCAATCATGACAATGGAAGAACACAGATAATTGACCTTTTTAATCAAGATAAGTATTTAAGTGCCATTCAAACCAATGCTCCCCATCTATTACGCTATTTGGCCACTGCATTCATCGTTAACAAAAGGCGGAGGCCACAGTTCAAAGATTTTATCAAGGTTATTCAGCAAGAACAGAATTCCTATAAGGATCCCATCACAGAGTTTTTGACTTGTGTCTATGTCAATTATGATTTTGATGGGGCACAAAAAAAGATGAGAGATGTCCTTGCCGAGAAGTTGAACTTAAATTACGAGGAAGCGGAGCAGTGGATTGTTAATCTTGTTCGGACCTCAAAGCTTGATGCCAAGATTGATTCCAAGACGGGAACGGTTATAATGGAACCAAACCAGCCCAACGTATATGAAGAACTGATAGATCACACCAAATCATTATCTGGGCGTACCTACAAGTTAGTCACTCAACTTCTAGAGCATGCACAGGCTCAAGCAACCAGATAA 894 42.95 MADYDLTPRIAPNLDRHLVFPLLEFLQERQLYPDEQILKAKIELLNKTNMVDYAMDIHKSLRAEVVGRLKALEESAAPLVTFLQNPAAVQELRADKQYNLQMLNDRYQNFSSHMNQVQSRIWLMHWSLFIFFNHDNGRTQIIDLFNQDKYLSAIQTNAPHLLRYLATAFIVNKRRRPQFKDFIKVIQQEQNSYKDPITEFLTCVYVNYDFDGAQKKMRDVLAEKLNLNYEEAEQWIVNLVRTSKLDAKIDSKTGTVIMEPNQPNVYEELIDHTKSLSGRTYKLVTQLLEHAQAQATR 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 9073351 9076651 + Cp4.1LG10g11360.1 Cpe10g01213 476750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g01213 297 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E 108 219 IPR016650 GO:0003743|GO:0005737|GO:0005852
Cpe10g01213 297 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E 220 295 IPR016650 GO:0003743|GO:0005737|GO:0005852
Cpe10g01213 297 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E 1 108 IPR016650 GO:0003743|GO:0005737|GO:0005852
Cpe10g01213 297 SUPERFAMILY Winged helix DNA-binding domain 219 264 IPR036390 -
Cpe10g01213 297 SMART eIF3_N_2 5 111 IPR019010 -
Cpe10g01213 297 Pfam eIF3 subunit 6 N terminal domain 5 114 IPR019010 -
Cpe10g01213 297 ProSiteProfiles PCI domain profile. 95 263 IPR000717 -
Cpe10g01213 297 Pfam PCI domain 220 259 IPR000717 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g01213 Cpe-Chr10:9073351 Cpe19g00038 Cpe-Chr19:276521 0 dispersed
Cpe10g01213 Cpe-Chr10:9073351 Cpe19g00037 Cpe-Chr19:275180 5.80E-22 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g01213 K03250 - csv:101205199 355.14