Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g01239 ATGGCCTCAAAGACGAGTTTGAAACCTTCTGCAAAGCAAACTAAGGGGATAAGCACTGTTAAATCGACTGATGCTAGTGATCTTAAATCCTTACCTTCAGTTGTTTCTGGAGGAGATGTATCAAACTCCACACACAGATTCTTGAATCATTCTGCTTTGATTGATTCGTCGAAAACCAAATCCTCGACTTTGAATCCTAAAGAATCTACTGAGTCTTGTAATCAGGAAGTCAATGAAAATTCCTTGAACTCTATAGATCTTGAGAAGAAAACATCTGAATGTGGGAGTGGGAAGGATAGTTCTGCTTCTGCCAAAGTCAATGATGGAACAAACAGTCTTGCCAAGACTAGTGGGAGCGCGAAAGTTAGTGACCGTGTTGAGATGGTCGAAAGTGGCAAGAGTAGTATATGTCGAGGAAGTACGAGTAGCGATATCAGTGATGAAAGCACCTGTAGCAGCTTTAGTAGTAGTATCAGCAAGCCTCACAAATCAAATGACTTGAGATGGGAGGCTATCCAAGCTGTACGTGCAAGGGATGGGATGTTGGGATTAGGCCATTTTAGACTATTGAAGAGACTAGGTTGTGGCGATATCGGAAGTGTCTACCTGTCGGAATTGAGTGGCACTAAGTGTTATTTTGCAATGAAGGTTATGGATAAAGGGTCTCTCGCTAGTCGAAAAAAGTTGCTTCGTGCTCAGACCGAAAGAGAAATATTGCAGTCTCTTGATCATCCATTCCTTCCTACATTGTATACACATTTTGAGACTGACAAGTTCTCATGCTTGGTGATGGAGTTCTGCCCTGGGGGAGACTTACACACTCTAAGGCAGAGACAGCCGGGGAAGTATTTTCCCGAACAAGCGGTGAAATTTTACGTAGCGGAGGTCCTCCTAGCACTCGAGTATCTTCACATGCTTGGGATTGTATATCGGGACCTTAAGCCCGAGAATGTTCTCGTGAGGGAAGATGGACACATTATGCTTTCAGACTTCGATCTTTCCCTAAGATGTGCTGTTAGTCCAACATTAGTGAAGGGCTCATGTTCTGAGTCCGAACCCTTACGAAAGAATTCAGCTTACTGTGCCCAGCCAGCTTGTATCGAGCCTTCCTGCATCCAGCCATCCTGTGTAGTTCCCACGTCGTGTTTTACTCCCCGACTTTTCTCTAGCAAGTCAAAGAAGGATAGAAAACCCAAGACTGAAATAGGAAACCAGGTAACACCATTGCCAGAGCTGATTGCAGAGCCGACGGAGGCGAGGTCAATGTCATTTGTTGGTACACATGAGTACTTGGCACCCGAGATCATTAAAGGCGAAGGTCACGGAAGTGCTGTTGACTGGTGGACTTTTGGAATCTTCCTATACGAACTGTTGTTTGGTAAAACTCCTTTTAAAGGATCTGGGAATCGGGCGACGTTGTTCAACGTCGTTGGTCAGCCATTGCGGTTTCCAGAATCCCCAGTTGTCAGTTTTGCTGCAAGGGATCTCATCAGGGGATTGCTCGTCAAGGAACCACAGCATAGGTTAGCTTACAAAAGAGGGGCAACTGAGATCAAGCAACACCCGTTCTTTGAAGGTGTTAACTGGGCGTTGATACGATGTGCTTCGCCACCAGACGTACCGAAGCCTGTTGAGATCGAGAGGATACCATCACCAGCACCTCCAGTCAGTGGAAAAGCAGTGATGGCTACTAGACCTGCTCCTGATTCCAAATTATCTGATAATTATCTCGAGTTTGATTTCTTTTAG 1749 45.23 MASKTSLKPSAKQTKGISTVKSTDASDLKSLPSVVSGGDVSNSTHRFLNHSALIDSSKTKSSTLNPKESTESCNQEVNENSLNSIDLEKKTSECGSGKDSSASAKVNDGTNSLAKTSGSAKVSDRVEMVESGKSSICRGSTSSDISDESTCSSFSSSISKPHKSNDLRWEAIQAVRARDGMLGLGHFRLLKRLGCGDIGSVYLSELSGTKCYFAMKVMDKGSLASRKKLLRAQTEREILQSLDHPFLPTLYTHFETDKFSCLVMEFCPGGDLHTLRQRQPGKYFPEQAVKFYVAEVLLALEYLHMLGIVYRDLKPENVLVREDGHIMLSDFDLSLRCAVSPTLVKGSCSESEPLRKNSAYCAQPACIEPSCIQPSCVVPTSCFTPRLFSSKSKKDRKPKTEIGNQVTPLPELIAEPTEARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRFPESPVVSFAARDLIRGLLVKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCASPPDVPKPVEIERIPSPAPPVSGKAVMATRPAPDSKLSDNYLEFDFF 582
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 9546367 9550444 + Cp4.1LG10g12480.1 Cpe10g01239 476776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g01239 582 Gene3D Transferase(Phosphotransferase) domain 1 271 339 - -
Cpe10g01239 582 MobiDBLite consensus disorder prediction 1 125 - -
Cpe10g01239 582 ProSiteProfiles Protein kinase domain profile. 187 524 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe10g01239 582 Gene3D Phosphorylase Kinase; domain 1 185 270 - -
Cpe10g01239 582 ProSitePatterns Serine/Threonine protein kinases active-site signature. 308 320 IPR008271 GO:0004672|GO:0006468
Cpe10g01239 582 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 24 582 - -
Cpe10g01239 582 Pfam Protein kinase domain 421 524 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe10g01239 582 Pfam Protein kinase domain 188 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe10g01239 582 CDD STKc_phototropin_like 186 547 - -
Cpe10g01239 582 Gene3D Transferase(Phosphotransferase) domain 1 418 541 - -
Cpe10g01239 582 MobiDBLite consensus disorder prediction 1 119 - -
Cpe10g01239 582 SMART serkin_6 187 524 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe10g01239 582 SUPERFAMILY Protein kinase-like (PK-like) 159 551 IPR011009 -
Cpe10g01239 582 PANTHER FLIPPASE KINASE 1-RELATED 24 582 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00586 Cpe-Chr3:3529869 Cpe10g01239 Cpe-Chr10:9546367 0 dispersed
Cpe03g01844 Cpe-Chr3:13755082 Cpe10g01239 Cpe-Chr10:9546367 0 dispersed
Cpe04g00529 Cpe-Chr4:5753669 Cpe10g01239 Cpe-Chr10:9546367 0 dispersed
Cpe07g01089 Cpe-Chr7:9630990 Cpe10g01239 Cpe-Chr10:9546367 3.40E-44 dispersed
Cpe09g00738 Cpe-Chr9:6818279 Cpe10g01239 Cpe-Chr10:9546367 1.17E-136 dispersed
Cpe10g00271 Cpe-Chr10:1615268 Cpe10g01239 Cpe-Chr10:9546367 0 dispersed
Cpe10g00735 Cpe-Chr10:4209095 Cpe10g01239 Cpe-Chr10:9546367 0 dispersed
Cpe10g01151 Cpe-Chr10:8351951 Cpe10g01239 Cpe-Chr10:9546367 0 dispersed
Cpe10g01239 Cpe-Chr10:9546367 Cpe19g00458 Cpe-Chr19:4046135 0 dispersed
Cpe16g00797 Cpe-Chr16:7793278 Cpe10g01239 Cpe-Chr10:9546367 5.22E-147 dispersed
Cpe19g00918 Cpe-Chr19:6637719 Cpe10g01239 Cpe-Chr10:9546367 2.37E-14 dispersed
Cpe10g01239 Cpe-Chr10:9546367 Cpe20g00678 Cpe-Chr20:4641885 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62692 PF00069 Pkinase 1.00E-36 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g01239 K08286 - csv:101213662 1018.84