Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g01253 ATGTACTCCACGACTGATAATATGGGAAAGGAAAATTTGCTGCAGAGAGTAGATGACAACACTGAAGTGAATGGTTGTTCAACTACCGAGAACGAAGATCTCGGTTGTCAGTCTCGCCATAGTGTAGGCAAGGAATCTGGGGCAAGTTGTCGTGTGTGTCAATGTAGCGAATCTGACAGGAGAGGTGATGCTGTTTTAGGATTTCTAGGCATCACTCCTCCAATAATGGAAGAAAGAAAAAGTGATCGGGATTCTACGTCCGAGAAGCAAAGTCTAGAACATGTTGATGGTTGTTCTGTGCTGAAAAAAAACGTTAAAGGGGATTCTGGTTCGATCAAGTTCATAGGCCCTAATGGGGAGGTTTTCATTTGCAAAGCTGATATTGAAATGGGTTCATGTCATCTTGAAGATGCATTAGTGGAGCTTGGGTGTTCTTGCAAGAGTGACCTTGCTCTTGTACACTATGCATGTGCTCTCAAATGGTTTGTCAGCCATGGATCAACTGTTTGTGAAATTTGTGGATGTATTGCGGAAAATATTAGAACTGATGACTTTAGAAAGGTTGTGAGTTCTTTAAAAGAATATGAAGCTTTAAGGGAAAGAACTGCTCGTGGGGAACCGAATCCTATGCAGACAATTGCTAGTACCGATATAGATCCTGATGCTGTTGCTGCTGTCCGCAGGCAGCGGCTTAGTGAAATTGCATTGTGGTTTAGTCCTCATAGTTATATTAGCAACAATAACTCTAGTGCAGCCTCCCAGGTTGTTTCTGAACATTTGAATACCATCTCAGAAAATGTCGTTCGTGCCGAAAATCCTGCAACCAGGTGGGCTGTTGAGGGTACTGGAATTCTCCTTGCTACAGGTCTGCTCACCGTTACGCTCGCTTGCCTAATAGCTCCTCGTGTGGGGAAGAAAACTGCAAAAAGTGGCCTTCATATTCTTCTCGGAGGAGTTTGTGCGTTAACAGTAGTGGTTTTCTTCCGCTTTGAAACCGTTTATTAA 1005 43.28 MYSTTDNMGKENLLQRVDDNTEVNGCSTTENEDLGCQSRHSVGKESGASCRVCQCSESDRRGDAVLGFLGITPPIMEERKSDRDSTSEKQSLEHVDGCSVLKKNVKGDSGSIKFIGPNGEVFICKADIEMGSCHLEDALVELGCSCKSDLALVHYACALKWFVSHGSTVCEICGCIAENIRTDDFRKVVSSLKEYEALRERTARGEPNPMQTIASTDIDPDAVAAVRRQRLSEIALWFSPHSYISNNNSSAASQVVSEHLNTISENVVRAENPATRWAVEGTGILLATGLLTVTLACLIAPRVGKKTAKSGLHILLGGVCALTVVVFFRFETVY 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 9691445 9695859 + Cp4.1LG10g12430.1 Cpe10g01253 476790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g01253 334 PANTHER ZINC FINGER, RING-CH-TYPE 12 330 - -
Cpe10g01253 334 SMART ringv_2 133 174 IPR011016 GO:0008270
Cpe10g01253 334 ProSiteProfiles Zinc finger RING-CH-type profile. 116 180 IPR011016 GO:0008270
Cpe10g01253 334 SUPERFAMILY RING/U-box 140 175 - -
Cpe10g01253 334 Pfam RING-variant domain 139 173 IPR011016 GO:0008270
Cpe10g01253 334 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 176 IPR013083 -
Cpe10g01253 334 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 12 330 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g01253 Cpe-Chr10:9691445 Cpe19g00111 Cpe-Chr19:899755 0 dispersed
Cpe10g01253 Cpe-Chr10:9691445 Cpe13g01080 Cpe-Chr13:8732164 1.29E-09 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g01253 - - csv:101218157 567.77