Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00003 ATGGCGGGTCGGAGGCTATCCTCGCTCTTATCTCGTTCCCTTGCTTCTTCGCCTGCTCTCCTTTCCAAAGGGAGGAGGCCTTTGGGAGGCACAACAACTGGCAAATATAGCACTTCGGCTGCTGTTGAAACCCCGATTACTCCATCCGTGAAAGTGAATTACACCCAGCTATTAATCAACGGACAGTTTCTGGATTCAATCTCAGGAAAAACTTTTCCTACATTCGATCCAAGGACTGGGGAAGTCATTGCGAATGTTGCTGAAGGTGACGCCAAAGATGTTGATCTTGCAGTTTCTGCTGCACGCAAGGCATTTGATGAAGGGCCTTGGCCTAGGATGACTGCTTATGAAAGATCAAAGATAATTTTGCGGTTTGCTGATTTGGTTGAAAAGAATGCTGAGGAAATTGCAGCACTCGAAACTTGGGACAATGGCAAAACATACGAACAGTCAGCAAAACTGGAAGTCCCAATGTTTGTACGCATCTTTCGATACTACGCCGGATGGGCCGATAAGATTCACGGACTCACTGTTCCAGCTGATGGCTCGTATAATGTGCAGACCTTGCACGAACCTATTGGTGTTGCAGGTCAAATCATTCCATGGAACTTTCCTCTGCTCATGTTTGCTTGGAAGGTTGGCCCAGCATTAGCATGTGGGAATACTATTGTTCTGAAGACAGCCGAGCAGACACCTTTGTCTGCTCTCTATGTGGCCAAGCTGTTGCATGAGGCTGGACTACCTGAGGGCGTTCTGAATATTGTTTCCGGTTATGGACCCACCGCTGGTGCTGCTCTTGCCAGTCATATGGAAGTTGATAAGCTTGCTTTTACTGGATCAACCGAAACAGGGAAAGTAGTACTTGAACTAGCTGCAAAAAGCAATCTGAAGCCAGTCACATTGGAGCTTGGAGGAAAATCCCCTTTCATTGTATGTGAGGATGCTGATGTTGACAAAGCTGTGGAGATGGCGCACTTCGCTCTCTTCTTCAACCAGGGACAATGTTGCTGTGCTGGTTCTCGTACTTTTGTTCATGAAAAAGTATATGATGAATTTATTGAAAAAGCAAGGAAACGGGCTGTGAACCGCGTTGTTGGTGATCCGTTCCTAGGTGGAATTGAGCAAGGTCCTCAGGTGGATGGGGAACAATTCAAAAAGATTTTGAGATATATAAAATCTGGAATTGAAGGAGGAGCCACTCTTGAAGCTGGAGGAGAGAGGTTCGGTTCCAAGGGCTACTATGTCCAGCCAACAGTTTTCTCAAACGTCAAGGATGACATGACAATTGCACGGGAGGAGATTTTTGGTCCTGTACAGACAATCTTGAAATACAAAGAGATCGAGGAGGTGATAAGGAGGGCAAATGCTAGTCGCTATGGGCTGGCCGCAGGGGTGTTTACTCAAAACATCAACACAGCCAACAGGCTGACGCGTGCTTTGAGAGTCGGCTCTGTGTGGATCAATTGCTTTGATATATTTGATGCTGCAATTCCTTTTGGAGGGTACAAGATGAGCGGACATGGGCGAGAAAAGGGCATTTACAGCCTCAGCAATTACCTGCAAGTGAAGGCTGTTGTCACTCCTTTGGAAAACCCTGCTTGGCTTTAG 1608 46.7 MAGRRLSSLLSRSLASSPALLSKGRRPLGGTTTGKYSTSAAVETPITPSVKVNYTQLLINGQFLDSISGKTFPTFDPRTGEVIANVAEGDAKDVDLAVSAARKAFDEGPWPRMTAYERSKIILRFADLVEKNAEEIAALETWDNGKTYEQSAKLEVPMFVRIFRYYAGWADKIHGLTVPADGSYNVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTIVLKTAEQTPLSALYVAKLLHEAGLPEGVLNIVSGYGPTAGAALASHMEVDKLAFTGSTETGKVVLELAAKSNLKPVTLELGGKSPFIVCEDADVDKAVEMAHFALFFNQGQCCCAGSRTFVHEKVYDEFIEKARKRAVNRVVGDPFLGGIEQGPQVDGEQFKKILRYIKSGIEGGATLEAGGERFGSKGYYVQPTVFSNVKDDMTIAREEIFGPVQTILKYKEIEEVIRRANASRYGLAAGVFTQNINTANRLTRALRVGSVWINCFDIFDAAIPFGGYKMSGHGREKGIYSLSNYLQVKAVVTPLENPAWL 535
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 14515 21890 + Cp4.1LG11g00670.1 Cpe11g00003 476797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00003 535 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 301 308 IPR029510 GO:0016491
Cpe11g00003 535 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 329 340 IPR016160 GO:0016491
Cpe11g00003 535 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 59 523 IPR016162 GO:0016491
Cpe11g00003 535 PANTHER ALDEHYDE DEHYDROGENASE FAMILY 2 MEMBER B4, MITOCHONDRIAL 25 535 - -
Cpe11g00003 535 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 25 535 - -
Cpe11g00003 535 CDD ALDH_F2BC 52 527 - -
Cpe11g00003 535 Pfam Aldehyde dehydrogenase family 68 525 IPR015590 GO:0016491
Cpe11g00003 535 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 305 494 IPR016163 GO:0016620
Cpe11g00003 535 SUPERFAMILY ALDH-like 50 529 IPR016161 GO:0016491
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01548 Cpe-Chr4:12131591 Cpe11g00003 Cpe-Chr11:14515 0 dispersed
Cpe11g00003 Cpe-Chr11:14515 Cpe18g00444 Cpe-Chr18:5463577 0 dispersed
Cpe20g00200 Cpe-Chr20:1157827 Cpe11g00003 Cpe-Chr11:14515 1.41E-14 dispersed
Cpe11g00003 Cpe-Chr11:14515 Cpe07g00001 Cpe-Chr7:393 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00003 K00128 - csv:101202756 969.148