Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00021 ATGGAACCACCTTTTCTGTTATGGAAACCGGTTTTTGTAGTTTTCGCACTCCTCCAAGTTTCTTCTGCTACGCTGTCTCCTTCTGGTGTCAACTACGAAGTCGTAGCTTTGATGGCCATAAAAAATGATTTAATAGATCCCCACAATGTCTTGGAGAATTGGGATTCTAATTCTGTGGATCCTTGTAGCTGGAGAATGGTCACCTGTTCTCCTGATGGATATGTTTCTGCTTTGGGGCTACCGAGCCAGAGTTTGTCTGGGGTCTTATCACCGGGGATTGGAAACCTCAGTAAGTTGGAATCAGTGTTGCTTCAGAACAATGACATTTCAGGACCAATTCCTGCAACCATTGGTAAATTAGATAACTTGCAGACTCTTGATCTCTCCAACAATGTATTCAGTGGTTTAATACCCAGTTCCCTCGGAGACTTGAAGAAGCTTAATTATTTGCGACTAAATAACAACAGCCTAACTGGACCTTGCCCTGAATCTCTATCCAAAGTTGAAGGTCTCACGCTTGTGGACCTTTCATACAACAACTTGAGTGGCTCCTTGCCCAAAATATCAGCAAGAACATTCAAAATTATTGGTAACCCTCTGAGCTGTGGTCCAAACAACTGTTCTGCTATCTTTCCAGAGCCCTTGTCGTTTGCTCCAGATGCTCTCGATGGAAATTTGGGATTTGGTAAGAGCCACCGCAAGGCAATTGCTTTTGGGGCAAGTTTTAGTGCTGCTCTTATTGTATTAGTCCTTATTGGACTACTGGTCTGGTGGAGATACAGACACAACCAGCAGATCTTCTTTGATGTAAATGATCAATATGACCCAGAGGTACGTTTGGGTCATTTGAGAAGGTACACATTCAAGGAACTTCGGGCAGCAACTGATCATTTCAACTCAAAGAATATCTTGGGTAGAGGTGGGTTTGGAATTGTGTTCAAGGGATGCTTAAATGATGGGACTCTGGTAGCTGTTAAAAGGTTGAAGGATTATAACACTGCCGGTGGGGAGATCCAATTTCAGACTGAAGTAGAGATGATAAGCTTAGCTGTGCACCGAAACCTTCTCAGGCTTTTTGGCTTCTGTTCTACTGAGAGTGAAAGACTGCTGGTTTACCCATTTATGCCCAATGGCAGCGTTGCATCTCGTCTAAGAGCATCTCCTTGTTTTCATTATGTGAAAAGGTTGCACCAGGAAGGAAAGCTGAATATGATGGTGGATAAGGATCTAAGAGGCAACTACGACAGAGTTGAGCTAGAGGAAATGGTCCAGGTTGCCCTGTTATGCACTCAATTCAATCCTTCTCACCGACCCAAAATGTCTGAAGTACTAAAAATGTTGGAAGGCGATGGGTTAGCTGAGAAATGGGAAGCGTCACAGCACGTCGAGACGCCAAGATACCGACTGTGTGAGAAACCCCCTCAGCTGTACTCAGATTATATAGAAGAATCTTCTTTGATCGTGGAAGCCATGGAGCTTTCAGGCCCCAGATGA 1494 44.04 MEPPFLLWKPVFVVFALLQVSSATLSPSGVNYEVVALMAIKNDLIDPHNVLENWDSNSVDPCSWRMVTCSPDGYVSALGLPSQSLSGVLSPGIGNLSKLESVLLQNNDISGPIPATIGKLDNLQTLDLSNNVFSGLIPSSLGDLKKLNYLRLNNNSLTGPCPESLSKVEGLTLVDLSYNNLSGSLPKISARTFKIIGNPLSCGPNNCSAIFPEPLSFAPDALDGNLGFGKSHRKAIAFGASFSAALIVLVLIGLLVWWRYRHNQQIFFDVNDQYDPEVRLGHLRRYTFKELRAATDHFNSKNILGRGGFGIVFKGCLNDGTLVAVKRLKDYNTAGGEIQFQTEVEMISLAVHRNLLRLFGFCSTESERLLVYPFMPNGSVASRLRASPCFHYVKRLHQEGKLNMMVDKDLRGNYDRVELEEMVQVALLCTQFNPSHRPKMSEVLKMLEGDGLAEKWEASQHVETPRYRLCEKPPQLYSDYIEESSLIVEAMELSGPR 497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 117034 121515 + Cp4.1LG11g00800.1 Cpe11g00021 476815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00021 497 Pfam Leucine rich repeat 98 157 IPR001611 GO:0005515
Cpe11g00021 497 SMART serkin_6 298 447 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe11g00021 497 ProSiteProfiles Protein kinase domain profile. 298 497 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe11g00021 497 Gene3D Transferase(Phosphotransferase) domain 1 374 466 - -
Cpe11g00021 497 PANTHER PROTEIN NSP-INTERACTING KINASE 3 391 497 - -
Cpe11g00021 497 PANTHER PROTEIN NSP-INTERACTING KINASE 3 6 386 - -
Cpe11g00021 497 Gene3D Ribonuclease Inhibitor 30 209 IPR032675 -
Cpe11g00021 497 Pfam Protein tyrosine and serine/threonine kinase 301 392 IPR001245 GO:0004672|GO:0006468
Cpe11g00021 497 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Cpe11g00021 497 Gene3D Phosphorylase Kinase; domain 1 267 373 - -
Cpe11g00021 497 SUPERFAMILY L domain-like 31 199 - -
Cpe11g00021 497 SUPERFAMILY Protein kinase-like (PK-like) 271 389 IPR011009 -
Cpe11g00021 497 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 391 497 - -
Cpe11g00021 497 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 6 386 - -
Cpe11g00021 497 ProSitePatterns Protein kinases ATP-binding region signature. 304 326 IPR017441 GO:0005524
Cpe11g00021 497 SUPERFAMILY Protein kinase-like (PK-like) 391 455 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00346 Cpe-Chr1:1971042 Cpe11g00021 Cpe-Chr11:117034 1.07E-109 dispersed
Cpe11g00021 Cpe-Chr11:117034 Cpe13g01002 Cpe-Chr13:8267740 0 dispersed
Cpe11g00021 Cpe-Chr11:117034 Cpe07g00017 Cpe-Chr7:106748 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62693 PF07714 PK_Tyr_Ser-Thr 1.80E-12 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00021 - - csv:101208885 706.827