Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00023 ATGATTGAAATGGGGGAGAACATGTACGGCATGCGCTCCACTCCCCAATTCTCGCCCAAGTCCTTCCTTCCACCCCACACTCCTATCCTTCCCCTCGATTACCAGACCTTCCTTCCCTCCACCAACTACTTTCCCCGCGATCGGATTCCTGTGTTCGGATCCGATGAACTGCTTTCCGAACCTGAACCACCTTCCATCACTCCAGATTTCCCGCTCGCTCAAGATGTTCCCAGCGTCATCAAGGCCCAAATTCTCTCTCATCCTACCTATCCTCGTTTGCTTCACGCTTATATTGACTGCCACAAGGTTGGAGCTCCGCCGGAGATAGCTTGTTTGTTGGAGGAAATCCGGCGAGAAAATGACAGTCATAAACAAAACGCCATGTCCACGTGCTTCGGAGGCGATCCCGAGCTCGATGAGTTCATGGAAACATACTGTGACATGCTGGTGAAGTATAAATCAGATCTGTCAAGGCCCTTTCATGAAGCTTCCTCCTTCTTGAGTAACATCGAACTGCAACTTAGCAACCTCTGTGCTGGTGCCTCCACCAGAAGCTCCTCCAACGAGGATGCCATGTCATCAGATGATGAGCTTAACTGGGGAGAGAGGGAAGTACAAGATGCTCAAATGAGGTTAGAAGACAAAGGTCTTAAAGATATGCTCTTGAGTAGATTTGGCAGCCACATTGGAACCTTGAAGCTGGAATTTTCAAAGAAGAAGAAGAAAGGAAAACTACCTAAAGAAGGAAGGAAAGTACTGCTCGAGTGGTGGAATGTGCACTATAAATGGCCATATCCTACGGAAGCTGATAAGATGGCGCTGGCAGAGACAACAGGATTAGATCCGAAGCAAATTAACAATTGGTTCATAAATCAACGAAAGCGGCACTGGAAACCTTCTGAAAGTATGCAATTTGCAAGTATGGATGATGTGGGTGAACAATTATACGCTAGGCTCGACTCTTGA 966 47.41 MIEMGENMYGMRSTPQFSPKSFLPPHTPILPLDYQTFLPSTNYFPRDRIPVFGSDELLSEPEPPSITPDFPLAQDVPSVIKAQILSHPTYPRLLHAYIDCHKVGAPPEIACLLEEIRRENDSHKQNAMSTCFGGDPELDEFMETYCDMLVKYKSDLSRPFHEASSFLSNIELQLSNLCAGASTRSSSNEDAMSSDDELNWGEREVQDAQMRLEDKGLKDMLLSRFGSHIGTLKLEFSKKKKKGKLPKEGRKVLLEWWNVHYKWPYPTEADKMALAETTGLDPKQINNWFINQRKRHWKPSESMQFASMDDVGEQLYARLDS 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 125984 137057 + Cp4.1LG11g00740.1 Cpe11g00023 476817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00023 321 Pfam Homeobox KN domain 256 295 IPR008422 GO:0003677|GO:0006355
Cpe11g00023 321 SMART ELK_2 216 237 IPR005539 GO:0003677
Cpe11g00023 321 ProSitePatterns 'Homeobox' domain signature. 274 297 IPR017970 GO:0000981|GO:0006355
Cpe11g00023 321 SUPERFAMILY Homeodomain-like 237 308 IPR009057 -
Cpe11g00023 321 SMART KNOX2_2 128 179 IPR005541 GO:0003677|GO:0005634
Cpe11g00023 321 SMART KNOX1_2 78 122 IPR005540 GO:0003677|GO:0005634
Cpe11g00023 321 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 2 72 317 - -
Cpe11g00023 321 SMART HOX_1 238 303 IPR001356 GO:0003677
Cpe11g00023 321 Pfam ELK domain 217 237 IPR005539 GO:0003677
Cpe11g00023 321 Gene3D - 235 309 - -
Cpe11g00023 321 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 72 317 - -
Cpe11g00023 321 CDD homeodomain 250 300 IPR001356 GO:0003677
Cpe11g00023 321 Pfam KNOX2 domain 132 178 IPR005541 GO:0003677|GO:0005634
Cpe11g00023 321 Pfam KNOX1 domain 80 121 IPR005540 GO:0003677|GO:0005634
Cpe11g00023 321 ProSiteProfiles 'Homeobox' domain profile. 236 299 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01547 Cpe-Chr1:9233599 Cpe11g00023 Cpe-Chr11:125984 8.91E-48 dispersed
Cpe04g01564 Cpe-Chr4:12250525 Cpe11g00023 Cpe-Chr11:125984 3.43E-89 dispersed
Cpe11g00023 Cpe-Chr11:125984 Cpe11g00875 Cpe-Chr11:7100812 2.31E-76 dispersed
Cpe01g01546 Cpe-Chr1:9228197 Cpe11g00023 Cpe-Chr11:125984 5.72E-76 wgd
Cpe11g00023 Cpe-Chr11:125984 Cpe09g00513 Cpe-Chr9:3419266 7.68E-140 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50184 PF03791 KNOX2 1.70E-23 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00023 - - csv:101210523 503.442