Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe11g00023 | ATGATTGAAATGGGGGAGAACATGTACGGCATGCGCTCCACTCCCCAATTCTCGCCCAAGTCCTTCCTTCCACCCCACACTCCTATCCTTCCCCTCGATTACCAGACCTTCCTTCCCTCCACCAACTACTTTCCCCGCGATCGGATTCCTGTGTTCGGATCCGATGAACTGCTTTCCGAACCTGAACCACCTTCCATCACTCCAGATTTCCCGCTCGCTCAAGATGTTCCCAGCGTCATCAAGGCCCAAATTCTCTCTCATCCTACCTATCCTCGTTTGCTTCACGCTTATATTGACTGCCACAAGGTTGGAGCTCCGCCGGAGATAGCTTGTTTGTTGGAGGAAATCCGGCGAGAAAATGACAGTCATAAACAAAACGCCATGTCCACGTGCTTCGGAGGCGATCCCGAGCTCGATGAGTTCATGGAAACATACTGTGACATGCTGGTGAAGTATAAATCAGATCTGTCAAGGCCCTTTCATGAAGCTTCCTCCTTCTTGAGTAACATCGAACTGCAACTTAGCAACCTCTGTGCTGGTGCCTCCACCAGAAGCTCCTCCAACGAGGATGCCATGTCATCAGATGATGAGCTTAACTGGGGAGAGAGGGAAGTACAAGATGCTCAAATGAGGTTAGAAGACAAAGGTCTTAAAGATATGCTCTTGAGTAGATTTGGCAGCCACATTGGAACCTTGAAGCTGGAATTTTCAAAGAAGAAGAAGAAAGGAAAACTACCTAAAGAAGGAAGGAAAGTACTGCTCGAGTGGTGGAATGTGCACTATAAATGGCCATATCCTACGGAAGCTGATAAGATGGCGCTGGCAGAGACAACAGGATTAGATCCGAAGCAAATTAACAATTGGTTCATAAATCAACGAAAGCGGCACTGGAAACCTTCTGAAAGTATGCAATTTGCAAGTATGGATGATGTGGGTGAACAATTATACGCTAGGCTCGACTCTTGA | 966 | 47.41 | MIEMGENMYGMRSTPQFSPKSFLPPHTPILPLDYQTFLPSTNYFPRDRIPVFGSDELLSEPEPPSITPDFPLAQDVPSVIKAQILSHPTYPRLLHAYIDCHKVGAPPEIACLLEEIRRENDSHKQNAMSTCFGGDPELDEFMETYCDMLVKYKSDLSRPFHEASSFLSNIELQLSNLCAGASTRSSSNEDAMSSDDELNWGEREVQDAQMRLEDKGLKDMLLSRFGSHIGTLKLEFSKKKKKGKLPKEGRKVLLEWWNVHYKWPYPTEADKMALAETTGLDPKQINNWFINQRKRHWKPSESMQFASMDDVGEQLYARLDS | 321 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 125984 | 137057 | + | Cp4.1LG11g00740.1 | Cpe11g00023 | 476817 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe11g00023 | 321 | Pfam | Homeobox KN domain | 256 | 295 | IPR008422 | GO:0003677|GO:0006355 | |
Cpe11g00023 | 321 | SMART | ELK_2 | 216 | 237 | IPR005539 | GO:0003677 | |
Cpe11g00023 | 321 | ProSitePatterns | 'Homeobox' domain signature. | 274 | 297 | IPR017970 | GO:0000981|GO:0006355 | |
Cpe11g00023 | 321 | SUPERFAMILY | Homeodomain-like | 237 | 308 | IPR009057 | - | |
Cpe11g00023 | 321 | SMART | KNOX2_2 | 128 | 179 | IPR005541 | GO:0003677|GO:0005634 | |
Cpe11g00023 | 321 | SMART | KNOX1_2 | 78 | 122 | IPR005540 | GO:0003677|GO:0005634 | |
Cpe11g00023 | 321 | PANTHER | HOMEOBOX PROTEIN KNOTTED-1-LIKE 2 | 72 | 317 | - | - | |
Cpe11g00023 | 321 | SMART | HOX_1 | 238 | 303 | IPR001356 | GO:0003677 | |
Cpe11g00023 | 321 | Pfam | ELK domain | 217 | 237 | IPR005539 | GO:0003677 | |
Cpe11g00023 | 321 | Gene3D | - | 235 | 309 | - | - | |
Cpe11g00023 | 321 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 72 | 317 | - | - | |
Cpe11g00023 | 321 | CDD | homeodomain | 250 | 300 | IPR001356 | GO:0003677 | |
Cpe11g00023 | 321 | Pfam | KNOX2 domain | 132 | 178 | IPR005541 | GO:0003677|GO:0005634 | |
Cpe11g00023 | 321 | Pfam | KNOX1 domain | 80 | 121 | IPR005540 | GO:0003677|GO:0005634 | |
Cpe11g00023 | 321 | ProSiteProfiles | 'Homeobox' domain profile. | 236 | 299 | IPR001356 | GO:0003677 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe01g01547 | Cpe-Chr1:9233599 | Cpe11g00023 | Cpe-Chr11:125984 | 8.91E-48 | dispersed | |
Cpe04g01564 | Cpe-Chr4:12250525 | Cpe11g00023 | Cpe-Chr11:125984 | 3.43E-89 | dispersed | |
Cpe11g00023 | Cpe-Chr11:125984 | Cpe11g00875 | Cpe-Chr11:7100812 | 2.31E-76 | dispersed | |
Cpe01g01546 | Cpe-Chr1:9228197 | Cpe11g00023 | Cpe-Chr11:125984 | 5.72E-76 | wgd | |
Cpe11g00023 | Cpe-Chr11:125984 | Cpe09g00513 | Cpe-Chr9:3419266 | 7.68E-140 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
50184 | PF03791 | KNOX2 | 1.70E-23 | No_clan | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe11g00023 | - | - | csv:101210523 | 503.442 |