Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00043 ATGGAAATTCCAAGTTTTCTTCCCATAATAACCTTCACCCTTCTTCTCCAAATGTGCGCCATTTCATCTTCTCCAGTCTCCGACCCTGAACTAGTCGTCCAAGAAGTTCTCTCGAGCATCAACAATGCAACAACGAGAAGGAATTTGGGGTTCCTTTCCTGTGGAACTGGAAACCCAATAGACGATTGTTGGAGGTGCGACCCTAATTGGGAGAAGAATCGAAAGCGTCTAGCCGACTGCGGCATTGGGTTCGGGAAGCGAGCCATCGGCGGCAAAAACGGGAAATTCTACGTAGTCACTGACCCATCCGACAAGGACGTGGTGAACCCAAAACCAGGCACTCTTCGCCACGCCGTAATCCAAAAGGAACCCTTATGGATCACCTTTAAACGCGACATGGTCATCAAATTAAAAGCAGAGTTGCTGATGAACTCTTTCAAAACCATCGACGGTCGGGGTGTGTCGGTCCACATAGCCGGTGGGCCTTGCATTACAATTCAGTATGTGACCAACATTATCATCCACGGCATCAACATTCACGACTGCAAGCAAGGTGGGAACACGTACGTTAGAGATTCGCCGGAGCATTATGGTTGGAGGACTCTGTCGGACGGCGATGGGGTTTCGATATTTGGAGGCAGCCATGTTTGGATCGACCATTGCTCTTTGTCGAATTGTCGTGATGGGCTAATTGATGCGATTCATGGGTCTACAGCCATCACTGTTTCCAACAATTACATGACCCACCATAACAAAGTTATGCTTTTAGGACACAGTGATTCGTATACTCAAGACAAGAACATGCAAGTCACCATTGCTTTCAACCATTTTGGTGAGGGCCTTGTCCAGAGAATGCCACGATGCCGGCATGGGTACTTTCATGTGGTGAACAATGACTACACTCATTGGATAATGTACGCCATTGGTGGAAGTGCTTCCCCTACCATCAATAGCCAAGGGAACAGATACCTTGCTCCCAATAACCGAGATAGGAAAGAGGTCACAAAGCGGGAGGATGCACCACAAAGCAAATGGAAGAATTGGAATTGGAGGTCAAGTGGAGATTTGATGTTGAATGGAGCATTCTTCACGAGATCGGGTGCTGGATCGTCGTCTAGCTACGCGAGGGCGTCGAGCTTGAGTGCGAAGTCGTCGTCGTTGGTGAGTACGATGACGGCGGGAGCAGGGGTGCTGCGGTGCCGAAAGGGGTCCCGGTGTTAG 1221 49.3 MEIPSFLPIITFTLLLQMCAISSSPVSDPELVVQEVLSSINNATTRRNLGFLSCGTGNPIDDCWRCDPNWEKNRKRLADCGIGFGKRAIGGKNGKFYVVTDPSDKDVVNPKPGTLRHAVIQKEPLWITFKRDMVIKLKAELLMNSFKTIDGRGVSVHIAGGPCITIQYVTNIIIHGINIHDCKQGGNTYVRDSPEHYGWRTLSDGDGVSIFGGSHVWIDHCSLSNCRDGLIDAIHGSTAITVSNNYMTHHNKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWIMYAIGGSASPTINSQGNRYLAPNNRDRKEVTKREDAPQSKWKNWNWRSSGDLMLNGAFFTRSGAGSSSSYARASSLSAKSSSLVSTMTAGAGVLRCRKGSRC 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 220647 222595 - Cp4.1LG11g00400.1 Cpe11g00043 476837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00043 406 SUPERFAMILY Pectin lyase-like 42 400 IPR011050 -
Cpe11g00043 406 PANTHER PECTATE LYASE 10 403 - -
Cpe11g00043 406 Gene3D - 57 399 IPR012334 -
Cpe11g00043 406 Pfam Pectate lyase 165 321 IPR002022 -
Cpe11g00043 406 PRINTS Pollen allergen Amb family signature 80 97 IPR018082 -
Cpe11g00043 406 PRINTS Pollen allergen Amb family signature 104 129 IPR018082 -
Cpe11g00043 406 PRINTS Pollen allergen Amb family signature 140 156 IPR018082 -
Cpe11g00043 406 PRINTS Pollen allergen Amb family signature 204 225 IPR018082 -
Cpe11g00043 406 PRINTS Pollen allergen Amb family signature 284 303 IPR018082 -
Cpe11g00043 406 PRINTS Pollen allergen Amb family signature 306 325 IPR018082 -
Cpe11g00043 406 PRINTS Pollen allergen Amb family signature 348 372 IPR018082 -
Cpe11g00043 406 PRINTS Pollen allergen Amb family signature 377 400 IPR018082 -
Cpe11g00043 406 SMART amb_all 132 329 IPR002022 -
Cpe11g00043 406 PANTHER PECTATE LYASE 18-RELATED 10 403 IPR045032 GO:0030570
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00992 Cpe-Chr9:8789668 Cpe11g00043 Cpe-Chr11:220647 0 dispersed
Cpe11g00043 Cpe-Chr11:220647 Cpe20g00339 Cpe-Chr20:1918062 0 dispersed
Cpe11g00043 Cpe-Chr11:220647 Cpe07g00036 Cpe-Chr7:187888 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00043 K01728 - csv:101208076 734.561