Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe11g00043 | ATGGAAATTCCAAGTTTTCTTCCCATAATAACCTTCACCCTTCTTCTCCAAATGTGCGCCATTTCATCTTCTCCAGTCTCCGACCCTGAACTAGTCGTCCAAGAAGTTCTCTCGAGCATCAACAATGCAACAACGAGAAGGAATTTGGGGTTCCTTTCCTGTGGAACTGGAAACCCAATAGACGATTGTTGGAGGTGCGACCCTAATTGGGAGAAGAATCGAAAGCGTCTAGCCGACTGCGGCATTGGGTTCGGGAAGCGAGCCATCGGCGGCAAAAACGGGAAATTCTACGTAGTCACTGACCCATCCGACAAGGACGTGGTGAACCCAAAACCAGGCACTCTTCGCCACGCCGTAATCCAAAAGGAACCCTTATGGATCACCTTTAAACGCGACATGGTCATCAAATTAAAAGCAGAGTTGCTGATGAACTCTTTCAAAACCATCGACGGTCGGGGTGTGTCGGTCCACATAGCCGGTGGGCCTTGCATTACAATTCAGTATGTGACCAACATTATCATCCACGGCATCAACATTCACGACTGCAAGCAAGGTGGGAACACGTACGTTAGAGATTCGCCGGAGCATTATGGTTGGAGGACTCTGTCGGACGGCGATGGGGTTTCGATATTTGGAGGCAGCCATGTTTGGATCGACCATTGCTCTTTGTCGAATTGTCGTGATGGGCTAATTGATGCGATTCATGGGTCTACAGCCATCACTGTTTCCAACAATTACATGACCCACCATAACAAAGTTATGCTTTTAGGACACAGTGATTCGTATACTCAAGACAAGAACATGCAAGTCACCATTGCTTTCAACCATTTTGGTGAGGGCCTTGTCCAGAGAATGCCACGATGCCGGCATGGGTACTTTCATGTGGTGAACAATGACTACACTCATTGGATAATGTACGCCATTGGTGGAAGTGCTTCCCCTACCATCAATAGCCAAGGGAACAGATACCTTGCTCCCAATAACCGAGATAGGAAAGAGGTCACAAAGCGGGAGGATGCACCACAAAGCAAATGGAAGAATTGGAATTGGAGGTCAAGTGGAGATTTGATGTTGAATGGAGCATTCTTCACGAGATCGGGTGCTGGATCGTCGTCTAGCTACGCGAGGGCGTCGAGCTTGAGTGCGAAGTCGTCGTCGTTGGTGAGTACGATGACGGCGGGAGCAGGGGTGCTGCGGTGCCGAAAGGGGTCCCGGTGTTAG | 1221 | 49.3 | MEIPSFLPIITFTLLLQMCAISSSPVSDPELVVQEVLSSINNATTRRNLGFLSCGTGNPIDDCWRCDPNWEKNRKRLADCGIGFGKRAIGGKNGKFYVVTDPSDKDVVNPKPGTLRHAVIQKEPLWITFKRDMVIKLKAELLMNSFKTIDGRGVSVHIAGGPCITIQYVTNIIIHGINIHDCKQGGNTYVRDSPEHYGWRTLSDGDGVSIFGGSHVWIDHCSLSNCRDGLIDAIHGSTAITVSNNYMTHHNKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWIMYAIGGSASPTINSQGNRYLAPNNRDRKEVTKREDAPQSKWKNWNWRSSGDLMLNGAFFTRSGAGSSSSYARASSLSAKSSSLVSTMTAGAGVLRCRKGSRC | 406 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 220647 | 222595 | - | Cp4.1LG11g00400.1 | Cpe11g00043 | 476837 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe11g00043 | 406 | SUPERFAMILY | Pectin lyase-like | 42 | 400 | IPR011050 | - | |
Cpe11g00043 | 406 | PANTHER | PECTATE LYASE | 10 | 403 | - | - | |
Cpe11g00043 | 406 | Gene3D | - | 57 | 399 | IPR012334 | - | |
Cpe11g00043 | 406 | Pfam | Pectate lyase | 165 | 321 | IPR002022 | - | |
Cpe11g00043 | 406 | PRINTS | Pollen allergen Amb family signature | 80 | 97 | IPR018082 | - | |
Cpe11g00043 | 406 | PRINTS | Pollen allergen Amb family signature | 104 | 129 | IPR018082 | - | |
Cpe11g00043 | 406 | PRINTS | Pollen allergen Amb family signature | 140 | 156 | IPR018082 | - | |
Cpe11g00043 | 406 | PRINTS | Pollen allergen Amb family signature | 204 | 225 | IPR018082 | - | |
Cpe11g00043 | 406 | PRINTS | Pollen allergen Amb family signature | 284 | 303 | IPR018082 | - | |
Cpe11g00043 | 406 | PRINTS | Pollen allergen Amb family signature | 306 | 325 | IPR018082 | - | |
Cpe11g00043 | 406 | PRINTS | Pollen allergen Amb family signature | 348 | 372 | IPR018082 | - | |
Cpe11g00043 | 406 | PRINTS | Pollen allergen Amb family signature | 377 | 400 | IPR018082 | - | |
Cpe11g00043 | 406 | SMART | amb_all | 132 | 329 | IPR002022 | - | |
Cpe11g00043 | 406 | PANTHER | PECTATE LYASE 18-RELATED | 10 | 403 | IPR045032 | GO:0030570 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe09g00992 | Cpe-Chr9:8789668 | Cpe11g00043 | Cpe-Chr11:220647 | 0 | dispersed | |
Cpe11g00043 | Cpe-Chr11:220647 | Cpe20g00339 | Cpe-Chr20:1918062 | 0 | dispersed | |
Cpe11g00043 | Cpe-Chr11:220647 | Cpe07g00036 | Cpe-Chr7:187888 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe11g00043 | K01728 | - | csv:101208076 | 734.561 |