Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00049 ATGGTCATGGAAAATGGCTTCTCTTCTCCTCGTAGCGATGCGTTTCCCGTCGGTCTTCGTGTTCTTGTCGTTGATGATGATCCAACATGGTTGAGAATCCTGGAAAAGATGCTCAAGAAGTGCTCCTATGAAGTGACAACATGTTGTTTAGCAAGGGAGGCTCTAAGCCTGCTTAGGGAGAGAAAAGATGGATACGATATCGTAATCAGCGACGTAAACATGCCTGATATGGATGGTTTTAAACTCCTTGAGCATGTGGGATTGGAAATGGACCTGCCAGTTATCATGATGTCGGTTGATGGTGAAACAAGCCGGGTAATGAAAGGGGTTCAACACGGGGCTTGTGATTATCTTCTAAAACCAATACGAATGAAAGAACTTCGAAACATATGGCAGCACGTATTGCGAAAGAAGATACAAGAAGGAAGAGATATTGAAGGACATGATGTTCTTGAAGGTATCCAGATTCTAAGAAATGGATCAGATAGGTACGATGATAGCCAGTTCCTGAGAGGAGAGGAACTATTTTCACTGAGAAAAAGAAAAGATATTGATAAGCATGAAGACAGAGAGTTTTGTGACACTTCTTCCACAAAGAAAGCCAGAGTTGTCTGGTCGGTTGATCTACACCAGAAGTTTGTCAAAGCAGTAGACCATATAGGTTTTGACAAAGTTGGGCCTAAAAAGATTCTTGATCTGATGAATGTTCCATGGCTGACTAGAGAAAATGTGGCTAGCCACTTGCAGAAATATCGTCTCTATTTGAGTAGACTGCAGAAAGAAAATGACCCAAAAGCTTGCTTTGTTGTTGGGATGAAACATACTGATTCGTGTTCGAAGGATCGAGACGGGAACTTCAGCCTTTGTAGCTCGTTGGCCGGGCCACAAACTGATGTGACAAACAGCAGCTTCAGTTTTTCAGGTGATAACTTCCTTCTGCAGAATGATTCATCAGAGCCAAAAAGAGCTGCTGCTGCTGCTAGGAGTGTTCCTGAACCAATAAAGCTTGCAGCCTTTGATCCCAGCAAGCGAACCTGTTACCCTTGGGTTGATGCTCCAGAAACAAAGTTCAAACAAGAAATCAAGCCAGTTGTGCATTCAGAAGGAGATTTCAGTCAGTTCCCTGCAACGGTTCCACCGCACCACGTTCAAATCGACCAACTACAATCGATTTCGTCGATTAGTTCTGGACGGTCCGCAACAGAGAAAGATATAGCAAGCTCCATTGAAAGAAGTGGGTTACCCTTTGAATCCTTTGATGAAGACTTGCAGGGCTATCTGCTTGAAGATGGGTGCTATCCAAAGAACCTTGATCATCAGCAGATCATAGAGTTTCCAGATTATGGTGATCCAGGCCTTTTCACTGAAGTTCCTGCTTACCTTTACGATGCAATGAGGTTTGGCTATGAGTACTCCTATGACCCAACTGAGTATTATCCGGTGATAGATGAAGGCCTATTTATTGCATGA 1470 43.4 MVMENGFSSPRSDAFPVGLRVLVVDDDPTWLRILEKMLKKCSYEVTTCCLAREALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVLRKKIQEGRDIEGHDVLEGIQILRNGSDRYDDSQFLRGEELFSLRKRKDIDKHEDREFCDTSSTKKARVVWSVDLHQKFVKAVDHIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRLQKENDPKACFVVGMKHTDSCSKDRDGNFSLCSSLAGPQTDVTNSSFSFSGDNFLLQNDSSEPKRAAAAARSVPEPIKLAAFDPSKRTCYPWVDAPETKFKQEIKPVVHSEGDFSQFPATVPPHHVQIDQLQSISSISSGRSATEKDIASSIERSGLPFESFDEDLQGYLLEDGCYPKNLDHQQIIEFPDYGDPGLFTEVPAYLYDAMRFGYEYSYDPTEYYPVIDEGLFIA 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 251288 253873 + Cp4.1LG11g00530.1 Cpe11g00049 476843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00049 489 PANTHER TWO-COMPONENT RESPONSE REGULATOR 4 411 - -
Cpe11g00049 489 Pfam Response regulator receiver domain 21 130 IPR001789 GO:0000160
Cpe11g00049 489 ProSiteProfiles Response regulatory domain profile. 20 135 IPR001789 GO:0000160
Cpe11g00049 489 CDD REC_typeB_ARR-like 21 135 - -
Cpe11g00049 489 SUPERFAMILY CheY-like 18 143 IPR011006 -
Cpe11g00049 489 Pfam Myb-like DNA-binding domain 202 252 IPR001005 -
Cpe11g00049 489 PANTHER TWO-COMPONENT RESPONSE REGULATOR 4 411 IPR045279 GO:0009736
Cpe11g00049 489 SUPERFAMILY Homeodomain-like 198 257 IPR009057 -
Cpe11g00049 489 Gene3D - 196 259 - -
Cpe11g00049 489 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 200 253 IPR006447 GO:0003677
Cpe11g00049 489 Gene3D - 19 184 - -
Cpe11g00049 489 SMART REC_2 19 131 IPR001789 GO:0000160
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00165 Cpe-Chr8:1065824 Cpe11g00049 Cpe-Chr11:251288 6.65E-95 dispersed
Cpe11g00049 Cpe-Chr11:251288 Cpe12g00300 Cpe-Chr12:1997163 5.45E-95 dispersed
Cpe20g00010 Cpe-Chr20:65704 Cpe11g00049 Cpe-Chr11:251288 8.12E-20 dispersed
Cpe11g00049 Cpe-Chr11:251288 Cpe07g00041 Cpe-Chr7:203304 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50185 PF00072 Response_reg 9.20E-25 CL0304 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00049 - K14491 csv:101204370 685.641