Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe11g00054 | ATGTACTTGTCTGATAAGCCTCGCCCAATCGATATTTACAAGGAAGAAGCTAGCAGAGATATGATGATCGAGGTCGCCTCCAATGCCGACCACCATATTCAACCTCATCAGCCACAGCCGACTCATCAGCAGCACCAAATGATGCTCGGCGATAGCAGTGGTGAGGATCATGAAGTCAAGGCTCCGAAGAAGCGGGCGGAGACCTGGGTTCAGGATGAGACTCGAAGCTTAATTGCCCTACGCCGGGAGATGGATGGTTTGTTCAATACCTCGAAATCCAACAAGCATTTGTGGGAGCAGATATCGGCTAAGATGAGGGAAAGGGGCTTTGATCGCTCTCCGACTATGTGTACTGACAAATGGAGGAACTTGCTCAAGGAGTTCAAGAAGGCAAAGCACCAGGATAGGGGAAGTGGCTCTGCTAAGATGTCGTATTACAAGGAGATTGAAGAAATTTTGAAGGAGAGAAGCAAAAGTACGCAGTACAAGAGCCCCACGCCACCCAAGATTGATTCATATATTCAATTCTCGGACAAAGGTAGAAGTTTCGAATTGCTATTTTTGGGGCCTGCATTCTTTAAGTCTGTTGAATATGATGTGCAAATAGTAGGAATAGAGGATAATGGTCTAACTTTCGGACCCGTTGAAGGTGGCAGGCCTTCACTCAATCTTGAAAGACAGCTAGATCATGATGGACATCCCCTTGCCATCACAGCAGCTGATGCAGTTGCTGCAACGGGCATTCCACCTTGGAATTGGAGAGAGGCACCCGGAAATGATGGGGAGAGTCAGGCATTTGGCGGGAGAGTAATATCAGTCAAGTGGGGGGACTACACAAGAAGAATCGGTATTGATGGCACCTCAGAGGCCATCAAAGAGGCAATCAAATCTGCATTCAGGTTGAGAACTAAACGTGCATTTTGGTTAGAGGATGAGGACCAGGTTGTCAGAAGTCTGGACAGGGACATGCCTTTAGGAAACTACACTCTTCACCTTGATGAAGGGTTGGCTGTGAAAATCTGCCTCTATGATGAATCTGATCACTTACCGGTACATACCGAAGAAAAAATATTTTACATTGAAGAAGATTACCGAGATTTTTTAACTCGTCGGGGCTGGACATGTCTTCGGGAGTTTGATGGGTACAGAAACATCGATACTATGGATGATCTTCGTCCTGGTGCAATATACCGCGGTATAAGTTGA | 1206 | 46.43 | MYLSDKPRPIDIYKEEASRDMMIEVASNADHHIQPHQPQPTHQQHQMMLGDSSGEDHEVKAPKKRAETWVQDETRSLIALRREMDGLFNTSKSNKHLWEQISAKMRERGFDRSPTMCTDKWRNLLKEFKKAKHQDRGSGSAKMSYYKEIEEILKERSKSTQYKSPTPPKIDSYIQFSDKGRSFELLFLGPAFFKSVEYDVQIVGIEDNGLTFGPVEGGRPSLNLERQLDHDGHPLAITAADAVAATGIPPWNWREAPGNDGESQAFGGRVISVKWGDYTRRIGIDGTSEAIKEAIKSAFRLRTKRAFWLEDEDQVVRSLDRDMPLGNYTLHLDEGLAVKICLYDESDHLPVHTEEKIFYIEEDYRDFLTRRGWTCLREFDGYRNIDTMDDLRPGAIYRGIS | 401 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 285130 | 289926 | + | Cp4.1LG11g00490.1 | Cpe11g00054 | 476848 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe11g00054 | 401 | MobiDBLite | consensus disorder prediction | 34 | 50 | - | - | |
Cpe11g00054 | 401 | ProSiteProfiles | Myb-like domain profile. | 61 | 125 | IPR001005 | - | |
Cpe11g00054 | 401 | PANTHER | - | 5 | 190 | - | - | |
Cpe11g00054 | 401 | SMART | sant | 65 | 127 | IPR001005 | - | |
Cpe11g00054 | 401 | PANTHER | - | 204 | 400 | - | - | |
Cpe11g00054 | 401 | Gene3D | - | 69 | 131 | - | - | |
Cpe11g00054 | 401 | MobiDBLite | consensus disorder prediction | 34 | 67 | - | - | |
Cpe11g00054 | 401 | PANTHER | TRIHELIX TRANSCRIPTION FACTOR GT-4 | 204 | 400 | - | - | |
Cpe11g00054 | 401 | MobiDBLite | consensus disorder prediction | 51 | 67 | - | - | |
Cpe11g00054 | 401 | CDD | GT1 | 67 | 132 | - | - | |
Cpe11g00054 | 401 | PANTHER | TRIHELIX TRANSCRIPTION FACTOR GT-4 | 5 | 190 | - | - | |
Cpe11g00054 | 401 | Pfam | Myb/SANT-like DNA-binding domain | 68 | 152 | IPR044822 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe10g00956 | Cpe-Chr10:5403241 | Cpe11g00054 | Cpe-Chr11:285130 | 2.01E-11 | dispersed | |
Cpe11g00054 | Cpe-Chr11:285130 | Cpe20g00654 | Cpe-Chr20:4154198 | 5.86E-11 | dispersed | |
Cpe11g00054 | Cpe-Chr11:285130 | Cpe07g00047 | Cpe-Chr7:224772 | 1.33E-34 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
50186 | PF13837 | Myb_DNA-bind_4 | 4.20E-21 | CL0123 | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe11g00054 | - | - | csv:101222888 | 683.33 |