Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00054 ATGTACTTGTCTGATAAGCCTCGCCCAATCGATATTTACAAGGAAGAAGCTAGCAGAGATATGATGATCGAGGTCGCCTCCAATGCCGACCACCATATTCAACCTCATCAGCCACAGCCGACTCATCAGCAGCACCAAATGATGCTCGGCGATAGCAGTGGTGAGGATCATGAAGTCAAGGCTCCGAAGAAGCGGGCGGAGACCTGGGTTCAGGATGAGACTCGAAGCTTAATTGCCCTACGCCGGGAGATGGATGGTTTGTTCAATACCTCGAAATCCAACAAGCATTTGTGGGAGCAGATATCGGCTAAGATGAGGGAAAGGGGCTTTGATCGCTCTCCGACTATGTGTACTGACAAATGGAGGAACTTGCTCAAGGAGTTCAAGAAGGCAAAGCACCAGGATAGGGGAAGTGGCTCTGCTAAGATGTCGTATTACAAGGAGATTGAAGAAATTTTGAAGGAGAGAAGCAAAAGTACGCAGTACAAGAGCCCCACGCCACCCAAGATTGATTCATATATTCAATTCTCGGACAAAGGTAGAAGTTTCGAATTGCTATTTTTGGGGCCTGCATTCTTTAAGTCTGTTGAATATGATGTGCAAATAGTAGGAATAGAGGATAATGGTCTAACTTTCGGACCCGTTGAAGGTGGCAGGCCTTCACTCAATCTTGAAAGACAGCTAGATCATGATGGACATCCCCTTGCCATCACAGCAGCTGATGCAGTTGCTGCAACGGGCATTCCACCTTGGAATTGGAGAGAGGCACCCGGAAATGATGGGGAGAGTCAGGCATTTGGCGGGAGAGTAATATCAGTCAAGTGGGGGGACTACACAAGAAGAATCGGTATTGATGGCACCTCAGAGGCCATCAAAGAGGCAATCAAATCTGCATTCAGGTTGAGAACTAAACGTGCATTTTGGTTAGAGGATGAGGACCAGGTTGTCAGAAGTCTGGACAGGGACATGCCTTTAGGAAACTACACTCTTCACCTTGATGAAGGGTTGGCTGTGAAAATCTGCCTCTATGATGAATCTGATCACTTACCGGTACATACCGAAGAAAAAATATTTTACATTGAAGAAGATTACCGAGATTTTTTAACTCGTCGGGGCTGGACATGTCTTCGGGAGTTTGATGGGTACAGAAACATCGATACTATGGATGATCTTCGTCCTGGTGCAATATACCGCGGTATAAGTTGA 1206 46.43 MYLSDKPRPIDIYKEEASRDMMIEVASNADHHIQPHQPQPTHQQHQMMLGDSSGEDHEVKAPKKRAETWVQDETRSLIALRREMDGLFNTSKSNKHLWEQISAKMRERGFDRSPTMCTDKWRNLLKEFKKAKHQDRGSGSAKMSYYKEIEEILKERSKSTQYKSPTPPKIDSYIQFSDKGRSFELLFLGPAFFKSVEYDVQIVGIEDNGLTFGPVEGGRPSLNLERQLDHDGHPLAITAADAVAATGIPPWNWREAPGNDGESQAFGGRVISVKWGDYTRRIGIDGTSEAIKEAIKSAFRLRTKRAFWLEDEDQVVRSLDRDMPLGNYTLHLDEGLAVKICLYDESDHLPVHTEEKIFYIEEDYRDFLTRRGWTCLREFDGYRNIDTMDDLRPGAIYRGIS 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 285130 289926 + Cp4.1LG11g00490.1 Cpe11g00054 476848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00054 401 MobiDBLite consensus disorder prediction 34 50 - -
Cpe11g00054 401 ProSiteProfiles Myb-like domain profile. 61 125 IPR001005 -
Cpe11g00054 401 PANTHER - 5 190 - -
Cpe11g00054 401 SMART sant 65 127 IPR001005 -
Cpe11g00054 401 PANTHER - 204 400 - -
Cpe11g00054 401 Gene3D - 69 131 - -
Cpe11g00054 401 MobiDBLite consensus disorder prediction 34 67 - -
Cpe11g00054 401 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-4 204 400 - -
Cpe11g00054 401 MobiDBLite consensus disorder prediction 51 67 - -
Cpe11g00054 401 CDD GT1 67 132 - -
Cpe11g00054 401 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-4 5 190 - -
Cpe11g00054 401 Pfam Myb/SANT-like DNA-binding domain 68 152 IPR044822 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00956 Cpe-Chr10:5403241 Cpe11g00054 Cpe-Chr11:285130 2.01E-11 dispersed
Cpe11g00054 Cpe-Chr11:285130 Cpe20g00654 Cpe-Chr20:4154198 5.86E-11 dispersed
Cpe11g00054 Cpe-Chr11:285130 Cpe07g00047 Cpe-Chr7:224772 1.33E-34 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50186 PF13837 Myb_DNA-bind_4 4.20E-21 CL0123 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00054 - - csv:101222888 683.33