Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00066 ATGGATATTACTGAGGTTGAAGAAAATTTATTTGCTGCAAGTGATGCCAAGCTACACGGGGGAATGTGCAAGACTCTTTCTGCAACATATTGTAAAGTGTTATCAATTTTCCCTTCATTGGAAGCTGCCCGACCTCGGAGCAAATCTGGTATCCAGGCATTATGTTCACTGCATGTAGCACTGGAAAAAGCCAAGAATACTCTCCAACATTGTACAGAGAGCAGCAAACTTTACTTGGCTATAACTGGGGACTCTGTCCTGTTAAAGTTTGAGAAGGTAAAAAGAGCTCTGCAAGATAGTCTTAAACGTGTTGAAGATATTGTTCCACAGTCAATTGGCTATCAGGTTCAGGAGATTATGAAGGAACTGGGAAGTACTCATTTTTTCCTAGATCCCTTGGAGAAGCAAGTTGGCGATGACATTATTTTATTGCTCCAACAGGGACGAACATTTAACAACACTGTTGACAACGATGAGCTTGAAGCTTTTCACCAAGCTGCTATTAGACTTGGAATAAACTCCTCAAGAGCAGCTCTTGCAGAGAGAAGGGCACTAAAGAAACTAATTGACCGGTCTCGTATTGAAGAGGACAAGAGGAAGGAATCCATTGTAGCATATCTTTTGCATCTCATGAGGAAGTACTCCAAGTTATTTAGAAGTGAGGTATCAGACGACAACGATTCACAGGGTTCTGGACCTTGTTCACCCACTGTTCAGGGCTCTCTCGAGGACAGTGGACCTGGTGGAAACGGTCAGGCCTTTGAAAGGCAGCTAACAAAGATTGGTTCTTTTATTTTGAAGCCAAAAAATCGCAGATTTGAGCCGACTCCCCTTCCACCTGACGAGTTGAGGTGCCATATTTCATTGCAGCTTATGTATGATCCGGTCATAATTGCTTCCGGGCAAACATATGAAAGGATTTGCATTGAGAAGTGGTTTAGTGATGGCCATAACACCTGCCCGAAAACTCAACAGAAACTCTCTCATCTTACACTGACTCCGAATTACAGTGTTAAGGGCCTGATTACAAACTGGTGTGAACAGCATGGAGTTCCTATTCCTGATGGACCTCCAGATAGTCTTGACCTAAATTACTGGAGGCTCGCGTTATCTGAATCAGAGTCTCAATTGTCACATATGGAGTCTGTTGGTTCTTGTAAGTTGAAAGATGTTAAAGTTGTTCCACTAGAAGAAAATAGTATAACTGAGGAGATCAAAGGAAACGTAATGGACGACAAATCTGCTGAAGATCAAAAGTCCGACATAAATATGCATGCTAAATACGAAGAGTATTTGAAAGTCTTAAATGAAGAAGCCGACTTAAGGAAAAAGTCGGCGGTTGTGGAGCAAATGAGACAATTACTCAAGGAGGATGAAGAGGCGAGGATATTTATGGGAGCTAATGGATTCGTCCAGGGACTTCTACGCTACTTAGAGATGGCCATGAGAGAACAAAATACTAGGGCTCAGGAAAGTGGAGCAATGGCTCTTTTCAACCTTGCTGTCAACAACGACAGGAACAAAGAAATAATGCTGGCGGCAGGGATGATTCCATTGTTGGAGGAAATGATTATGAACCCAAATTCCCACGGATATGCAACGGCCCTCTATCTCAACGTCTCCTGTCTGGAAGAAGCAAAATCTATTATCGGCTCAAGTTGTGCAGTCCCGTACTTGATTCAGCCCCTCCACGCGCGTACCCAAACACTATGCAAGCTTGATGCACTTCACACACTTTACAATCTCTCAACTGTGCCCTCCAATATACCCAACCTGATTTCTTCTGAAATCATCGGGGGACTTCAAGCCCTTCTTGCAGCCCGTCTTGATCGAACATGGACCGAAAAGTGCATAGCCATCTTGATAAATATAGCTTCAAGTGAATTAGGTAGAGATCAAATGTCATCCACTCCAGAAATTATCAGTGGGTTGGCAGCAATATTAGACAGTGGTGAAGCCCTTGAGCAGGAACAAGCAGTGACTTGTCTCTTGATTCTGTGCAATGGGAATGAGAAGTGCAGTGAGATGGTCCTACAGGAAGGCGTAATTCCCGGGCTGGTGTCGATGTCTGTGAACGGGACAACGAGAGGTAAGGAGAAGGCTCAAAAGCTTCTGATGTTGTTTAGGGAGCAAAGACAACAGGAGCCACCACCGCCACTGCCACTGCCACCTGTATCCATACCGAAACCACTATCAGAGAGTAGCGGGACATCCATGCCTGTGGCAGAATCAAAGCCACTGTGCAAGTCAATTTCAAGAAGAAAAACAGGAAAAGCTTTTGGCTTTTTATGGAAAAGCAAAAGCTATTCAGTGTACCAATTCTGA 2325 43.83 MDITEVEENLFAASDAKLHGGMCKTLSATYCKVLSIFPSLEAARPRSKSGIQALCSLHVALEKAKNTLQHCTESSKLYLAITGDSVLLKFEKVKRALQDSLKRVEDIVPQSIGYQVQEIMKELGSTHFFLDPLEKQVGDDIILLLQQGRTFNNTVDNDELEAFHQAAIRLGINSSRAALAERRALKKLIDRSRIEEDKRKESIVAYLLHLMRKYSKLFRSEVSDDNDSQGSGPCSPTVQGSLEDSGPGGNGQAFERQLTKIGSFILKPKNRRFEPTPLPPDELRCHISLQLMYDPVIIASGQTYERICIEKWFSDGHNTCPKTQQKLSHLTLTPNYSVKGLITNWCEQHGVPIPDGPPDSLDLNYWRLALSESESQLSHMESVGSCKLKDVKVVPLEENSITEEIKGNVMDDKSAEDQKSDINMHAKYEEYLKVLNEEADLRKKSAVVEQMRQLLKEDEEARIFMGANGFVQGLLRYLEMAMREQNTRAQESGAMALFNLAVNNDRNKEIMLAAGMIPLLEEMIMNPNSHGYATALYLNVSCLEEAKSIIGSSCAVPYLIQPLHARTQTLCKLDALHTLYNLSTVPSNIPNLISSEIIGGLQALLAARLDRTWTEKCIAILINIASSELGRDQMSSTPEIISGLAAILDSGEALEQEQAVTCLLILCNGNEKCSEMVLQEGVIPGLVSMSVNGTTRGKEKAQKLLMLFREQRQQEPPPPLPLPPVSIPKPLSESSGTSMPVAESKPLCKSISRRKTGKAFGFLWKSKSYSVYQF 774
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 355247 360495 - Cp4.1LG11g00160.1 Cpe11g00066 476860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00066 774 SMART Ubox_2 282 345 IPR003613 GO:0004842|GO:0016567
Cpe11g00066 774 PANTHER U BOX DOMAIN-CONTAINING 1 718 - -
Cpe11g00066 774 Gene3D - 10 105 IPR036537 GO:0007166
Cpe11g00066 774 MobiDBLite consensus disorder prediction 712 746 - -
Cpe11g00066 774 MobiDBLite consensus disorder prediction 222 253 - -
Cpe11g00066 774 MobiDBLite consensus disorder prediction 224 246 - -
Cpe11g00066 774 CDD RING-Ubox_PUB 283 325 IPR045210 -
Cpe11g00066 774 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 352 IPR013083 -
Cpe11g00066 774 SUPERFAMILY RING/U-box 279 355 - -
Cpe11g00066 774 MobiDBLite consensus disorder prediction 714 728 - -
Cpe11g00066 774 Gene3D - 400 715 IPR011989 -
Cpe11g00066 774 ProSiteProfiles U-box domain profile. 278 352 IPR003613 GO:0004842|GO:0016567
Cpe11g00066 774 Pfam U-box domain 280 349 IPR003613 GO:0004842|GO:0016567
Cpe11g00066 774 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 469 515 IPR000225 GO:0005515
Cpe11g00066 774 SUPERFAMILY ARM repeat 432 709 IPR016024 -
Cpe11g00066 774 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 718 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00693 Cpe-Chr1:4020328 Cpe11g00066 Cpe-Chr11:355247 5.86E-12 dispersed
Cpe11g00066 Cpe-Chr11:355247 Cpe14g00527 Cpe-Chr14:3329480 4.38E-89 dispersed
Cpe20g00458 Cpe-Chr20:2648160 Cpe11g00066 Cpe-Chr11:355247 1.23E-13 dispersed
Cpe01g01608 Cpe-Chr1:9816481 Cpe11g00066 Cpe-Chr11:355247 0 wgd
Cpe11g00066 Cpe-Chr11:355247 Cpe07g00054 Cpe-Chr7:256630 0 wgd
Cpe11g00066 Cpe-Chr11:355247 Cpe09g00579 Cpe-Chr9:4001540 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00066 - - csv:101220593 1304.66