Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00080 ATGGTGCTGAGAAGACTTGGCAGGAACAGAAGTTTCAACAGAGAGAATCCAGATATTTTGATTATGATGATTGCAGTGGATCAGATAATAAGAGGACATGAGCAAGACAAAGGAGATGGCACAGAGAGGAAGGGCATGGGCCCTTTAAAGCCTGTAACAAAGATGGGTCCATTTCCTCCATCTCCACCGTCATGCAGAGTTCTCTTGTGGCCTCTTCACTCTCTTTCTTCCTTTTCATGGTTCTCTGAGATGGGTGTCATTCATTTTCCTGAGCTGTATGGCTTGTCATTATCTGTAGCATGCTTTTCATTCTTGTGGCAATTGGGTCTAGATATGCATGCTACCACTGCTAATTTCCCTTTCAATATTGAACTTAAACAGTTGGAAAATGACTTGATGAATGCTCTCGGGTGGATATGGCTAAGCCCAAATGACTTCACTTTCAGAACCCAGTCGATATGTCCAATTAATTTGACTTTGGGGTTCTTAGTTTCTTCTCCAATGTCGACTGCCCTGCAACAAATCGATCTGGGGGATGCTTGTTCGAGTCCCTCTGGTAATGCTGAGTTTCATAATCAGTTAGCAGGAGCAATTCCTGTTACTTTTTTTCAATCCACCTCTCTTACTCCAGTTAACGTTGTTTGTGAAAATACAAAAGATTCAGCATTTCCAGACCGTCATTTCCAGCCATTAGAAACTTTTAGAACGTGCATCATACCCAGTACCTCTAATGCTTTAAATTCTTCATTTGCAAGTTCTCTGATCTGTGAAGGTGATGAGTCTTTATGTAACTTGAACAACAAGTGGGAAAGCCAGAGGTTTAACTGTATTCAGCAACTTGCAAGGGAGAATCCAGAAAGATCAGATTTTCAGACCATCTCGTCTATGGAAAATCTGAATCAAAATGGCTGGATGCCATCTAATACTATGAACTCCAAGTTATGGAATGAGCTTTCTCTTAGTCTTGCCACATCCAATCCCGTCCTTAGTGGAGGAACCAATTTTCTGGACCAGTATTCACAGTTGACCTTTTCTGGTGCTACTCAGCCTTGCTTGAATAGCACAGAATTAGCCTCGAACCTGAATTCGTGCAACTTCAGGGACCTCTGTCTAAGTTACAGATGTGGTAGTCCTGTTCACCTCTCTCAAGCAATAGCGGGATCGAGATATCTCTCGGTCATTCAGGACGTACTTTCTCAAATTGCAAGCTATCCACTAGAAAGTTCAGAACAAGATAGGCATTTAACATCCACAGTTGGGTTTATGCCATTCTCATCAAGTTTCCTGGATGATAATACAGTTGAATTCGGTTCTGATGTAACTGGTAGATGCAGTTCACAAATTCAAATGGAGATTCAATGGCAAAAACTATCTGGTGATGCCAAGAAATCCCATCTGTTGACTCTACTACAATTGATTGATGAGAGGTACAGCCAATGCTTGGACGAGATTCATACTGTTACATCTGCATTTCATGCCGCCACTGATTTGGACCCTCGCTTGCATACTCGTTACACTCTCCAGACAATCACTTCTGTTTATAAAAACTTGAGGGAGAAAATTACTGATTGTATTATTGCTGTGGGGATGCATTCTGACACTATGTGCACCAAGGAGAACGAGAAAACCTTCGAGGCATCATTCATCCAGAAGCAGTGGGCTCTCCAGCAGTTGAAAAGGAAAGATAGTCAATTATGGAGGCCACAGAGAGGCTTACCTGAAAAATCTGTCTCAGTTCTAAGGGCATGGATGTTTCAGAACTTTCTCCATCCGTACCCCAAGGACACAGAGAAGCATTTACTTGCAGTAAAAAGTGGATTAACCAGAAATCAGGTTTCTAATTGGTTCATCAATGCTCGTGTTCGGCTGTGGAAACCGATGATCGAAGAAATGTATGCTGAAATGAGCAGAAGAAAATCCAGTTAA 1926 41.9 MVLRRLGRNRSFNRENPDILIMMIAVDQIIRGHEQDKGDGTERKGMGPLKPVTKMGPFPPSPPSCRVLLWPLHSLSSFSWFSEMGVIHFPELYGLSLSVACFSFLWQLGLDMHATTANFPFNIELKQLENDLMNALGWIWLSPNDFTFRTQSICPINLTLGFLVSSPMSTALQQIDLGDACSSPSGNAEFHNQLAGAIPVTFFQSTSLTPVNVVCENTKDSAFPDRHFQPLETFRTCIIPSTSNALNSSFASSLICEGDESLCNLNNKWESQRFNCIQQLARENPERSDFQTISSMENLNQNGWMPSNTMNSKLWNELSLSLATSNPVLSGGTNFLDQYSQLTFSGATQPCLNSTELASNLNSCNFRDLCLSYRCGSPVHLSQAIAGSRYLSVIQDVLSQIASYPLESSEQDRHLTSTVGFMPFSSSFLDDNTVEFGSDVTGRCSSQIQMEIQWQKLSGDAKKSHLLTLLQLIDERYSQCLDEIHTVTSAFHAATDLDPRLHTRYTLQTITSVYKNLREKITDCIIAVGMHSDTMCTKENEKTFEASFIQKQWALQQLKRKDSQLWRPQRGLPEKSVSVLRAWMFQNFLHPYPKDTEKHLLAVKSGLTRNQVSNWFINARVRLWKPMIEEMYAEMSRRKSS 641
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 425117 429441 + Cp4.1LG11g00120.1 Cpe11g00080 476874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00080 641 MobiDBLite consensus disorder prediction 34 55 - -
Cpe11g00080 641 SUPERFAMILY Homeodomain-like 567 635 IPR009057 -
Cpe11g00080 641 SMART HOX_1 566 630 IPR001356 GO:0003677
Cpe11g00080 641 CDD homeodomain 566 627 IPR001356 GO:0003677
Cpe11g00080 641 ProSiteProfiles 'Homeobox' domain profile. 563 626 IPR001356 GO:0003677
Cpe11g00080 641 PANTHER HOMEOBOX PROTEIN ATH1 167 640 - -
Cpe11g00080 641 Pfam Homeobox KN domain 583 622 IPR008422 GO:0003677|GO:0006355
Cpe11g00080 641 Gene3D - 560 641 - -
Cpe11g00080 641 Pfam Associated with HOX 385 522 IPR006563 -
Cpe11g00080 641 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 167 640 - -
Cpe11g00080 641 SMART prehox3 379 523 IPR006563 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe07g00555 Cpe11g00080 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g00080 Cpe-Chr11:425117 Cpe08g00966 Cpe-Chr8:7581769 3.09E-46 dispersed
Cpe11g00080 Cpe-Chr11:425117 Cpe07g00555 Cpe-Chr7:3675794 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50189 PF07526 POX 2.50E-20 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00080 - - cmos:111462608 941.799