Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00084 ATGGCTTGCTTACACGATCATAGTTGCGAAGATCACGATTGTTCTTCTGATTGGTCTCTATACAAGCACATAGACCTCCCCAGAGTTTCTGCTTTGAATGAGGCAACTCCAGGAAGTGTGAAGACTGTGTTTAAAGCTTGGGAGCATCGGTTAAATTCATCCGGGGATCACTTGGAAAGCAACGAGGGTGATCCCGAACTGATAGTTTTCATCCCATTTACATCAGATGTTAAGATCAAAAGCATAGCTATCATTGGTGGTCCAGATGGTACTAGTCCTTCAAAGATGCGAGCGTTTATCAACCGAGAAGGTATCGACTTCTCTGATGCTCAAAGTATGCAAGCTGTTCAGGAGTGGGATTTGGCTGAGAATTTGCAAGGAGTATTAGAGTACCAGACAAGATATTCCAAATTTCAAAGTGTGGCAAATATAACTTTGCATTTTCCGGACAATTATGGCGGTGACACGTCTCAGATACACTACATTGGGTTGAAAGGTGAAGCCACACAGCTAAAGAGAGATGTTGTTGCAACTATTGTTTATGAAATTACCCCAAATCCTTCTGACCACAAGACTCGAGCTGAAGGTGGTGCGGGGTTTTCACATGTTGAATGA 615 42.93 MACLHDHSCEDHDCSSDWSLYKHIDLPRVSALNEATPGSVKTVFKAWEHRLNSSGDHLESNEGDPELIVFIPFTSDVKIKSIAIIGGPDGTSPSKMRAFINREGIDFSDAQSMQAVQEWDLAENLQGVLEYQTRYSKFQSVANITLHFPDNYGGDTSQIHYIGLKGEATQLKRDVVATIVYEITPNPSDHKTRAEGGAGFSHVE 204
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 447137 451089 - Cp4.1LG11g00060.1 Cpe11g00084 476878

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00084 204 Pfam PITH domain 20 167 IPR010400 -
Cpe11g00084 204 Gene3D PITH domain 11 177 IPR037047 -
Cpe11g00084 204 PANTHER PITH DOMAIN-CONTAINING PROTEIN 1 5 195 - -
Cpe11g00084 204 ProSiteProfiles PITH domain profile. 9 184 IPR010400 -
Cpe11g00084 204 PANTHER AD039 HT014 THIOREDOXIN FAMILY TRP26 5 195 IPR045099 -
Cpe11g00084 204 SUPERFAMILY Galactose-binding domain-like 6 167 IPR008979 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00084 - - - csv:101216321 400.593
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g00084 Cpe-Chr11:447137 Cpe11g00980 Cpe-Chr11:8302920 2.13E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g57 . . . . . . . . . . . Cma05g00104 . . Sed08g1758 . . Bhi04g00493 Tan02g1651 Cmetu03g0683 . Hepe08g1380 . Lcy13g2175 . . . . . . . . . . . . . . . Blo17g00294 . . Bda13g01609 Bpe14g00256 . . . . . . . . . Car05g00090 Cpe11g00084 . . . . . . . . . . . . . . . Lsi08g01573 Csa02g01848 Chy03g01636 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011268 1 2 1 0 1 1 1 1 1 1 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe11g00084 Cpe_Chr11 FPKM 4.551669 4.613994 33.278275 29.659128 5.387278 5.099185 5.672917 68.812508 65.919182 65.280983