Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00092 ATGATTAACGAATCAATGTTTCTCAATCTCACGCCTCACATTTCATCCTGGGACTCCCTCGACGATCCCGCCGCCGCAATCCCATCCTATTTCACCGCGGGCAACGTGTCGCCGCTCGATTCGCCGACGGCGGCGGTTATGGACTACGATTCATCTCTCTGGGAGGATCAAGACTTGCCGGCCATTGTGGACGCCTTCACGTGCGACCATTTCCGGATGTACGAGTTCAAAGTCCGCGCGTGCGCACGTGGGAGGTCGCACGATTGGACCAAATGTCCCTACGCCCACGCCGGCGAAAAGGCTCGCCGCCGGGATCCGAGGAAGTTCAACTATTCCGGCACCGAGTGTCCGGATTTACGTCATGGGTGTTGTATGAAAGGAGACGCTTGTGAGTACGCTCATGGAGTTTTCGAAATTTGGCTCCACCCTGATCGGTACCGGACTCAGCCGTGCCGTGACGGAGCAGGCTGCCGAAGGCGGGTCTGTTTCTTCGCTCACTCGTCGGAGCAACTCCGAATCCCAGGGAAACAGAGCATCAGGTCTCCCCGAGGCAGGGAAATCACCGCCTCTGCCGTATCATCTCCGACGTCCATCCTAATATCATCATCGTCAGACTCGCCGCCTATGTCTCCGATCAGCCCTTTAACCACCGGTGGGGAATCATTCAGTAGATTAGTCGCATTGATGCACAATCTCCACTTCGATGAATTAAAAACGAATCCGGGGATCTCCGGCTTCGGTCCAAATTTCCGACGAAACTCCGGCGCATTTGATTCATGGGACAGAGATAACGAAGAAGAACCAGCAATGGAGAGAGTAGAATCAGGGAGAAACCTACGAGCCCAAATGTACGCGAAATTGATGAGAGAGAACTCGGTGGAGCGTGTCCGGCCGCTGATATTGGCCGGATCTCGGAACTAA 921 54.83 MINESMFLNLTPHISSWDSLDDPAAAIPSYFTAGNVSPLDSPTAAVMDYDSSLWEDQDLPAIVDAFTCDHFRMYEFKVRACARGRSHDWTKCPYAHAGEKARRRDPRKFNYSGTECPDLRHGCCMKGDACEYAHGVFEIWLHPDRYRTQPCRDGAGCRRRVCFFAHSSEQLRIPGKQSIRSPRGREITASAVSSPTSILISSSSDSPPMSPISPLTTGGESFSRLVALMHNLHFDELKTNPGISGFGPNFRRNSGAFDSWDRDNEEEPAMERVESGRNLRAQMYAKLMRENSVERVRPLILAGSRN 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 489610 490530 - Cp4.1LG11g00010.1 Cpe11g00092 476886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00092 306 PANTHER UNKEMPT FAMILY MEMBER 251 299 IPR045234 -
Cpe11g00092 306 PANTHER UNKEMPT FAMILY MEMBER 21 241 IPR045234 -
Cpe11g00092 306 Gene3D - 107 177 - -
Cpe11g00092 306 ProSiteProfiles Zinc finger C3H1-type profile. 110 137 IPR000571 GO:0046872
Cpe11g00092 306 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 21 241 - -
Cpe11g00092 306 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 251 299 - -
Cpe11g00092 306 MobiDBLite consensus disorder prediction 178 213 - -
Cpe11g00092 306 SMART c3hfinal6 145 168 IPR000571 GO:0046872
Cpe11g00092 306 SMART c3hfinal6 110 136 IPR000571 GO:0046872
Cpe11g00092 306 MobiDBLite consensus disorder prediction 183 213 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe06g00230 Cpe11g00092 CCT
Cpe07g00542 Cpe11g00092 CCT
Cpe06g00230 Cpe11g00092 ECH
Cpe07g00542 Cpe11g00092 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g00092 Cpe-Chr11:489610 Cpe18g00382 Cpe-Chr18:5117200 2.95E-77 dispersed
Cpe11g00092 Cpe-Chr11:489610 Cpe02g00246 Cpe-Chr2:1280451 5.26E-14 wgd
Cpe11g00092 Cpe-Chr11:489610 Cpe06g00230 Cpe-Chr6:1226770 3.22E-85 wgd
Cpe11g00092 Cpe-Chr11:489610 Cpe07g00542 Cpe-Chr7:3599148 3.23E-175 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00092 - - csv:101214248 513.457