Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00096 ATGATGAACAGCGGCGGCATCAAAACGGTGCTTCTCAATCCCAAATCCGATTGTTTTGGGTTGAGAACTGCTTTCTTTCACTCTACGCCTGTCCTCGATCGCAAAAGACGCAATCATTGGGACTCTAGATGCAACCATTACACGAAGAGTTTTAGAAGGATTAATGCAAAACAGACGTTGCTGCGCAATGTCAGTGCCTATGCTGAATTCCTCTTTCAGAGTTGGCAGGATGAGGGTGATACGAATGACCCTTCCTCAAGCAGAGGCACTTCTTGGTTTAAAAGGCAGTACTCACAAGGGGGCTCTAAACGAGAAAGGACCAACCAGAAACCACGGTGTTGGGGCAGAAGTTTTGAGTTTACTGAAGATGATCCTGACATTGAGACTGTTTTCCGATCTGCATTTGGTGGAAACCGGTCTTACTATTGGTCGTTTATTAATGAAGAAAACCCTCAATGGAGGAGCTCAACAAATTACTCAAGTAACTATGGAAGATCTTGGAACTGGCGTTATAGGGTCGATGAAGATTATGACGACTCCTCGAACGAATATGAGGACTCTGATGCTAATTTGGCGTCGCATAGGCGTGTTCTTGGACTAAAAGCGTCTGGTCCACTCAAACTTCAAGATGTTAAAAATGCGTATCGAGCATGTGCACTGAAATGGCACCCAGATCGTCACCAAGGTTCCTCCAAGGTGATGGCGGAGGAGAAGTTCAAACTTTGCAGCGTGGCATATCAATCCCTGTGCGACAAGTTAGCGGTAAATTAA 771 45.4 MMNSGGIKTVLLNPKSDCFGLRTAFFHSTPVLDRKRRNHWDSRCNHYTKSFRRINAKQTLLRNVSAYAEFLFQSWQDEGDTNDPSSSRGTSWFKRQYSQGGSKRERTNQKPRCWGRSFEFTEDDPDIETVFRSAFGGNRSYYWSFINEENPQWRSSTNYSSNYGRSWNWRYRVDEDYDDSSNEYEDSDANLASHRRVLGLKASGPLKLQDVKNAYRACALKWHPDRHQGSSKVMAEEKFKLCSVAYQSLCDKLAVN 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 515711 520241 - Cp4.1LG11g01050.1 Cpe11g00096 476890

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00096 256 ProSiteProfiles dnaJ domain profile. 193 254 IPR001623 -
Cpe11g00096 256 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN-RELATED 2 256 - -
Cpe11g00096 256 PRINTS DnaJ domain signature 215 230 IPR001623 -
Cpe11g00096 256 PRINTS DnaJ domain signature 234 254 IPR001623 -
Cpe11g00096 256 MobiDBLite consensus disorder prediction 78 109 - -
Cpe11g00096 256 CDD DnaJ 194 251 IPR001623 -
Cpe11g00096 256 SUPERFAMILY Chaperone J-domain 143 251 IPR036869 -
Cpe11g00096 256 Gene3D DnaJ domain 171 254 IPR036869 -
Cpe11g00096 256 MobiDBLite consensus disorder prediction 78 98 - -
Cpe11g00096 256 SMART dnaj_3 192 254 IPR001623 -
Cpe11g00096 256 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN-RELATED 2 256 - -
Cpe11g00096 256 Pfam DnaJ domain 197 252 IPR001623 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00096 - - - cmo:103486761 427.943
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe07g00209 Cpe11g00096 CCT
Cpe02g00508 Cpe11g00096 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g01103 Cpe-Chr5:7395915 Cpe11g00096 Cpe-Chr11:515711 2.03E-29 dispersed
Cpe11g00096 Cpe-Chr11:515711 Cpe07g00876 Cpe-Chr7:7889045 8.35E-06 dispersed
Cpe11g00096 Cpe-Chr11:515711 Cpe10g00177 Cpe-Chr10:1052646 9.84E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g4 Blo01g01484 . . . . . . Bma01g02238 . . Cma01g01777 Cma05g00116 . Car12g00229 . Cpe07g00209 . . . . . . . . . . . . . . . Cone20ag1268 Cone17ag0142 Cone16ag0715 Cone2ag0316 . . . . . . . . . . Bma01g00959 . . . . . Cma12g00246 Car01g01370 Car05g00100 Cpe11g00096 Cpe02g00508 . . . . . . . . . . . . . . . Csa02g02262 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002518 1 3 1 2 1 1 1 1 1 2 2 1 2 2 2 2 1 4 2 1 2 2 2 3 2 2 2 7 2 2 59
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe11g00096 Cpe_Chr11 FPKM 9.345529 0.0 25.363396 23.649212 0.0 0.0 0.0 24.683697 19.911854 25.526487