Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe11g00098 | ATGTTTTCGTGGCTGGCAAGGATGGCGTCGGCTTGTTGGAAACCAGTGAGGCGGTATGCCCGTATGAACAAGGATGATGATGAAGATTGTTCGTTAGAGGACTCTTTGTTGTGGAGCAGAGAGCTTGAAAAGCATTCTTATGGGGAGTTTTCTTTTGCTGTGGTTCAAGCGAATGAGGTAATTGAGGATAATAGTCAGGTTGAGGCTGGCCGTGATGCCACTTTTGTCGGCGTTTATGATGGCCATGGTGGCGCTGATGCTTCTCGCTTTATCTGTGATCATCTTTTCAGGAATTTAATGAGGCTTGCTCAAGAACATGGAACCATAACCGAAGACACCGTCCGGAATGCATTTTCTGCTACGGAGGAAGGGTTTCTTACCCTTGTTCGTCGGTCTTGGGGTATCAAACCGACAATTGCAGCAATGGGATCTTGTTGCCTGGTCGGAGTTATCTGGAGAGGTACATTGTTCATCGGTAACGTTGGCGATTCCCGGGCTGTCATCGGTTCTTTAGGTAAAGCTAATAAGATAGTTGCAGAACAGTTGACAAAGGATCACAATGCAAGTATTGAGGAGGTTCGACAAGAACTCCGGTCCTTGCATCCCGATGACTCACATATCGTCGTTATGAAGCACGGAGTCTGGCGTATAAAAGGCATAATTCAGGTATCATGTTACCAAAAACGTACATAA | 693 | 46.18 | MFSWLARMASACWKPVRRYARMNKDDDEDCSLEDSLLWSRELEKHSYGEFSFAVVQANEVIEDNSQVEAGRDATFVGVYDGHGGADASRFICDHLFRNLMRLAQEHGTITEDTVRNAFSATEEGFLTLVRRSWGIKPTIAAMGSCCLVGVIWRGTLFIGNVGDSRAVIGSLGKANKIVAEQLTKDHNASIEEVRQELRSLHPDDSHIVVMKHGVWRIKGIIQVSCYQKRT | 230 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 526743 | 529345 | - | Cp4.1LG11g01040.1 | Cpe11g00098 | 476892 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe11g00098 | 230 | ProSitePatterns | PPM-type phosphatase domain signature. | 75 | 83 | IPR000222 | GO:0043169 | |
| Cpe11g00098 | 230 | PANTHER | PROTEIN PHOSPHATASE 2C 68-RELATED | 6 | 224 | - | - | |
| Cpe11g00098 | 230 | SUPERFAMILY | PP2C-like | 53 | 224 | IPR036457 | - | |
| Cpe11g00098 | 230 | ProSiteProfiles | PPM-type phosphatase domain profile. | 49 | 230 | IPR001932 | - | |
| Cpe11g00098 | 230 | Pfam | Protein phosphatase 2C | 68 | 224 | IPR001932 | - | |
| Cpe11g00098 | 230 | SMART | PP2C_4 | 43 | 230 | IPR001932 | - | |
| Cpe11g00098 | 230 | PANTHER | ALPHABET, ISOFORM E-RELATED | 6 | 224 | - | - | |
| Cpe11g00098 | 230 | CDD | PP2Cc | 47 | 224 | IPR001932 | - | |
| Cpe11g00098 | 230 | Gene3D | - | 25 | 225 | IPR036457 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe03g00369 | Cpe-Chr3:1980533 | Cpe11g00098 | Cpe-Chr11:526743 | 2.84E-152 | dispersed | |
| Cpe11g00098 | Cpe-Chr11:526743 | Cpe03g00147 | Cpe-Chr3:742758 | 2.06E-81 | dispersed | |
| Cpe11g00098 | Cpe-Chr11:526743 | Cpe10g00688 | Cpe-Chr10:3957063 | 8.78E-82 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe11g00098 | K01102 | - | csv:101222146 | 424.091 |