Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00100 ATGGAAGATCAGTACAACCCTCATGGTGATAGCTCGAGGGGAAATTTCTTGTTCACTTCAGTCCCTGTTTTGGCCACAAATTCTTCTTCTCCTGGGGGCAATTTCGTAACTAGACACTCTTCTTCAAATGGCGGAGGCTCCTCCATTCTTGGGAGTCAGATCATGGCGGTAAACACTAATCTCGGTGGTGACTGTAACTTTCCGGCGTCGGATCTTGTTGTAAAAGTGGAGCCCAGTGGCTCCCAGTCTCAGAATTATCATCAAGTTCATGACTTTCATTACCATTTAATGAGAGAGTTTCAAATCAGTAGTGGTGGTAATAATAGTAACGATTTGGATTCCATGAAAGCCAAAATTATTTCCCATTCTCTATTCTCTAACCTCCTCCAAGCCTTCTTGGATTGCCAAAAGGTCGGAGCTCCTCCAGAGGTAGCGGCGAAACTTAGTTCGGTAGGGGAGGAATTTGAACGGCGGCGGTCTTCTATGGCGTCGACCGGCGGTTCAACTGACCCAGAACTGGATCACTTCATGGAAGCTTACTACGGGATGTTGGTGAAGTATAGAGAGGAGCTAACGAGGCCCATTCGAGAAGCTGCAGATTTCATGCACACAATTGAATTTCAGCTCAATACTCTCTGCAATGCCTCTTTTCAAATCTTAGCATCTGCAGCGACAGAAGAGAAGGGATGGTCGGAGGAGGAGCAAGAGAAGAGCAGGGAAGCAGAAAGAGAGGTAGGGGATCAAATGGACCCACGGGCTGCAGAGCGAGAGCTGAAGAATCACTTACTGAAGAAGTACAGTGGGTATCTAAGCAGTCTAAAGCAGGAGCTTTCAAAGAAAAAGAAGAAAGGGAAGCTCCCAAAAGACGCAAGGCAAGAGCTGCTCCGATGGTGGGAATTGCACAACAAATGGCCATACCCTTCGGAGGCTGAAAAGTTGGCGCTGGCGGAATCAACTGGGCTTGACCAGAAACAGATAAATAATTGGTTCATAAACCAGAGGAAAAGGCACTGGAAGCCGTCTGAGGATGTGCAGTTTATGGGCATGGAGGGGTTTTATCATCCCAATGCTGCTGCTGCTGCTGCTGCCGCCTTTTACTTCGATGGCCATTTCATGGGTGACTCCCATTATCGTTTGGGGCCATGA 1146 47.73 MEDQYNPHGDSSRGNFLFTSVPVLATNSSSPGGNFVTRHSSSNGGGSSILGSQIMAVNTNLGGDCNFPASDLVVKVEPSGSQSQNYHQVHDFHYHLMREFQISSGGNNSNDLDSMKAKIISHSLFSNLLQAFLDCQKVGAPPEVAAKLSSVGEEFERRRSSMASTGGSTDPELDHFMEAYYGMLVKYREELTRPIREAADFMHTIEFQLNTLCNASFQILASAATEEKGWSEEEQEKSREAEREVGDQMDPRAAERELKNHLLKKYSGYLSSLKQELSKKKKKGKLPKDARQELLRWWELHNKWPYPSEAEKLALAESTGLDQKQINNWFINQRKRHWKPSEDVQFMGMEGFYHPNAAAAAAAAFYFDGHFMGDSHYRLGP 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 547226 549510 + Cp4.1LG11g00950.1 Cpe11g00100 476894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00100 381 ProSiteProfiles ELK domain profile. 257 277 IPR005539 GO:0003677
Cpe11g00100 381 SMART KNOX2_2 163 214 IPR005541 GO:0003677|GO:0005634
Cpe11g00100 381 Pfam KNOX1 domain 115 156 IPR005540 GO:0003677|GO:0005634
Cpe11g00100 381 SMART HOX_1 279 344 IPR001356 GO:0003677
Cpe11g00100 381 ProSitePatterns 'Homeobox' domain signature. 315 338 IPR017970 GO:0000981|GO:0006355
Cpe11g00100 381 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 1 1 371 - -
Cpe11g00100 381 Pfam Homeobox KN domain 297 336 IPR008422 GO:0003677|GO:0006355
Cpe11g00100 381 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 371 - -
Cpe11g00100 381 Pfam KNOX2 domain 169 213 IPR005541 GO:0003677|GO:0005634
Cpe11g00100 381 CDD homeodomain 289 341 IPR001356 GO:0003677
Cpe11g00100 381 Gene3D - 274 346 - -
Cpe11g00100 381 SUPERFAMILY Homeodomain-like 278 350 IPR009057 -
Cpe11g00100 381 SMART KNOX1_2 113 157 IPR005540 GO:0003677|GO:0005634
Cpe11g00100 381 ProSiteProfiles 'Homeobox' domain profile. 277 340 IPR001356 GO:0003677
Cpe11g00100 381 MobiDBLite consensus disorder prediction 227 252 - -
Cpe11g00100 381 SMART ELK_2 257 278 IPR005539 GO:0003677
Cpe11g00100 381 SMART ELK_2 172 192 IPR005539 GO:0003677
Cpe11g00100 381 Pfam ELK domain 257 278 IPR005539 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe06g00228 Cpe11g00100 CCT
Cpe07g00541 Cpe11g00100 CCT
Cpe02g00244 Cpe11g00100 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g00100 Cpe-Chr11:547226 Cpe19g00947 Cpe-Chr19:6757566 3.37E-76 dispersed
Cpe11g00100 Cpe-Chr11:547226 Cpe02g00244 Cpe-Chr2:1263078 9.24E-123 wgd
Cpe11g00100 Cpe-Chr11:547226 Cpe06g00228 Cpe-Chr6:1210210 8.53E-124 wgd
Cpe11g00100 Cpe-Chr11:547226 Cpe07g00541 Cpe-Chr7:3587464 4.75E-152 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50190 PF03791 KNOX2 4.40E-22 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00100 - - csv:101219997 489.96