Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe11g00100 | ATGGAAGATCAGTACAACCCTCATGGTGATAGCTCGAGGGGAAATTTCTTGTTCACTTCAGTCCCTGTTTTGGCCACAAATTCTTCTTCTCCTGGGGGCAATTTCGTAACTAGACACTCTTCTTCAAATGGCGGAGGCTCCTCCATTCTTGGGAGTCAGATCATGGCGGTAAACACTAATCTCGGTGGTGACTGTAACTTTCCGGCGTCGGATCTTGTTGTAAAAGTGGAGCCCAGTGGCTCCCAGTCTCAGAATTATCATCAAGTTCATGACTTTCATTACCATTTAATGAGAGAGTTTCAAATCAGTAGTGGTGGTAATAATAGTAACGATTTGGATTCCATGAAAGCCAAAATTATTTCCCATTCTCTATTCTCTAACCTCCTCCAAGCCTTCTTGGATTGCCAAAAGGTCGGAGCTCCTCCAGAGGTAGCGGCGAAACTTAGTTCGGTAGGGGAGGAATTTGAACGGCGGCGGTCTTCTATGGCGTCGACCGGCGGTTCAACTGACCCAGAACTGGATCACTTCATGGAAGCTTACTACGGGATGTTGGTGAAGTATAGAGAGGAGCTAACGAGGCCCATTCGAGAAGCTGCAGATTTCATGCACACAATTGAATTTCAGCTCAATACTCTCTGCAATGCCTCTTTTCAAATCTTAGCATCTGCAGCGACAGAAGAGAAGGGATGGTCGGAGGAGGAGCAAGAGAAGAGCAGGGAAGCAGAAAGAGAGGTAGGGGATCAAATGGACCCACGGGCTGCAGAGCGAGAGCTGAAGAATCACTTACTGAAGAAGTACAGTGGGTATCTAAGCAGTCTAAAGCAGGAGCTTTCAAAGAAAAAGAAGAAAGGGAAGCTCCCAAAAGACGCAAGGCAAGAGCTGCTCCGATGGTGGGAATTGCACAACAAATGGCCATACCCTTCGGAGGCTGAAAAGTTGGCGCTGGCGGAATCAACTGGGCTTGACCAGAAACAGATAAATAATTGGTTCATAAACCAGAGGAAAAGGCACTGGAAGCCGTCTGAGGATGTGCAGTTTATGGGCATGGAGGGGTTTTATCATCCCAATGCTGCTGCTGCTGCTGCTGCCGCCTTTTACTTCGATGGCCATTTCATGGGTGACTCCCATTATCGTTTGGGGCCATGA | 1146 | 47.73 | MEDQYNPHGDSSRGNFLFTSVPVLATNSSSPGGNFVTRHSSSNGGGSSILGSQIMAVNTNLGGDCNFPASDLVVKVEPSGSQSQNYHQVHDFHYHLMREFQISSGGNNSNDLDSMKAKIISHSLFSNLLQAFLDCQKVGAPPEVAAKLSSVGEEFERRRSSMASTGGSTDPELDHFMEAYYGMLVKYREELTRPIREAADFMHTIEFQLNTLCNASFQILASAATEEKGWSEEEQEKSREAEREVGDQMDPRAAERELKNHLLKKYSGYLSSLKQELSKKKKKGKLPKDARQELLRWWELHNKWPYPSEAEKLALAESTGLDQKQINNWFINQRKRHWKPSEDVQFMGMEGFYHPNAAAAAAAAFYFDGHFMGDSHYRLGP | 381 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 547226 | 549510 | + | Cp4.1LG11g00950.1 | Cpe11g00100 | 476894 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe11g00100 | 381 | ProSiteProfiles | ELK domain profile. | 257 | 277 | IPR005539 | GO:0003677 | |
Cpe11g00100 | 381 | SMART | KNOX2_2 | 163 | 214 | IPR005541 | GO:0003677|GO:0005634 | |
Cpe11g00100 | 381 | Pfam | KNOX1 domain | 115 | 156 | IPR005540 | GO:0003677|GO:0005634 | |
Cpe11g00100 | 381 | SMART | HOX_1 | 279 | 344 | IPR001356 | GO:0003677 | |
Cpe11g00100 | 381 | ProSitePatterns | 'Homeobox' domain signature. | 315 | 338 | IPR017970 | GO:0000981|GO:0006355 | |
Cpe11g00100 | 381 | PANTHER | HOMEOBOX PROTEIN KNOTTED-1-LIKE 1 | 1 | 371 | - | - | |
Cpe11g00100 | 381 | Pfam | Homeobox KN domain | 297 | 336 | IPR008422 | GO:0003677|GO:0006355 | |
Cpe11g00100 | 381 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 1 | 371 | - | - | |
Cpe11g00100 | 381 | Pfam | KNOX2 domain | 169 | 213 | IPR005541 | GO:0003677|GO:0005634 | |
Cpe11g00100 | 381 | CDD | homeodomain | 289 | 341 | IPR001356 | GO:0003677 | |
Cpe11g00100 | 381 | Gene3D | - | 274 | 346 | - | - | |
Cpe11g00100 | 381 | SUPERFAMILY | Homeodomain-like | 278 | 350 | IPR009057 | - | |
Cpe11g00100 | 381 | SMART | KNOX1_2 | 113 | 157 | IPR005540 | GO:0003677|GO:0005634 | |
Cpe11g00100 | 381 | ProSiteProfiles | 'Homeobox' domain profile. | 277 | 340 | IPR001356 | GO:0003677 | |
Cpe11g00100 | 381 | MobiDBLite | consensus disorder prediction | 227 | 252 | - | - | |
Cpe11g00100 | 381 | SMART | ELK_2 | 257 | 278 | IPR005539 | GO:0003677 | |
Cpe11g00100 | 381 | SMART | ELK_2 | 172 | 192 | IPR005539 | GO:0003677 | |
Cpe11g00100 | 381 | Pfam | ELK domain | 257 | 278 | IPR005539 | GO:0003677 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe06g00228 | Cpe11g00100 | CCT | |
Cpe07g00541 | Cpe11g00100 | CCT | |
Cpe02g00244 | Cpe11g00100 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe11g00100 | Cpe-Chr11:547226 | Cpe19g00947 | Cpe-Chr19:6757566 | 3.37E-76 | dispersed | |
Cpe11g00100 | Cpe-Chr11:547226 | Cpe02g00244 | Cpe-Chr2:1263078 | 9.24E-123 | wgd | |
Cpe11g00100 | Cpe-Chr11:547226 | Cpe06g00228 | Cpe-Chr6:1210210 | 8.53E-124 | wgd | |
Cpe11g00100 | Cpe-Chr11:547226 | Cpe07g00541 | Cpe-Chr7:3587464 | 4.75E-152 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
50190 | PF03791 | KNOX2 | 4.40E-22 | No_clan | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe11g00100 | - | - | csv:101219997 | 489.96 |