Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00101 ATGATCCACAGAAGCCTCTTCTCCCGCTGCTTTCTCCCATCTCTTCGCCCCCCTTCTTCCTTTTCACCCTCTTCCTCGTCCAAGCTTGGAGGAGGCTGCCATGGCGATGCGTTTAGGGCAATATCTTCCATGCCGGAGCCTTGCCAATCATCGCCCATCAGTGATGGTGATAGCTGCGATTTTGATTGGGATAGTCTTGGATTTGGGCTGATGCCAACAGATTATATGTATATTATGAAATGCGCTATAAATGAGAGTTTTGAACGCGGTCAAATCAGCCGTTACGGGAACATTGAGCTTAGCCCTTCTGCTGGGGTTCTAAATTATGGCCAGGTAGCTTATGATTTCATACCATTTTTGGAAGCATTGAACTTGGGATTGTTTGAAGGTCTAAAAGCATATAGGAAAGACGATGGAGGGGTTCTTCTGTTTCGTCCACACGAAAACGCCCTCCGTATGAGGGCTGGCGCTGACCGAATGTGTATGCCGTCGCCCACCGTCGAGCAATTTGTTGATGCTGTGAAGCAAACTACCATTGCTAATAGGCGTTGGGTCCCTCCGCCGGGGAAAGGGTCACTTTACATAAGGCCTTTGCTCATTGGAACTGGTCCCATTCTTGGGTTGGCACCCTCCCCTGAGTATACTTTTCTAGTGTTTGCTTCCCCTGTTCGCAACTATTTTAAGGAAGGTTCGGCGCCCTTGAACCTATATGTCGAGAATGAATTCGACCGAGCATCTCGTGGCGGTACCGGAGGTGTGAAAAGCATTTCGAATTATGCTCCGGGCAATGTTATTTCAACTCCTGCTACACATGGAACGATTCTTCCAGGAGTAACCCGGAAAAGCATCATTGACATTGCCCGTGATCGCGGTTACGAGGTCGAGGAACGGGCTATTAATGTGGAAGAAGTGTTGGACGCTCGTGAAGTTTTCTGCACGGGAACGGCTGTCGGGGTGGCTCCTGTTGGGAGCATCACATGTATGGATAGAAGGATTGAGTACCAAACAGGTGCGGAGACGACATGCCAGGAACTGTATTCAACTCTTGTTGGGATTCAAACTGGAACCATTGAGGATAAGATGGGATGGACTGTTGAGATCTGTTGA 1107 48.87 MIHRSLFSRCFLPSLRPPSSFSPSSSSKLGGGCHGDAFRAISSMPEPCQSSPISDGDSCDFDWDSLGFGLMPTDYMYIMKCAINESFERGQISRYGNIELSPSAGVLNYGQVAYDFIPFLEALNLGLFEGLKAYRKDDGGVLLFRPHENALRMRAGADRMCMPSPTVEQFVDAVKQTTIANRRWVPPPGKGSLYIRPLLIGTGPILGLAPSPEYTFLVFASPVRNYFKEGSAPLNLYVENEFDRASRGGTGGVKSISNYAPGNVISTPATHGTILPGVTRKSIIDIARDRGYEVEERAINVEEVLDAREVFCTGTAVGVAPVGSITCMDRRIEYQTGAETTCQELYSTLVGIQTGTIEDKMGWTVEIC 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 550606 554307 + Cp4.1LG11g00970.1 Cpe11g00101 476895

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00101 368 PANTHER AMINO ACID AMINOTRANSFERASE 262 367 IPR005786 GO:0004084|GO:0009081
Cpe11g00101 368 PANTHER AMINO ACID AMINOTRANSFERASE 29 261 IPR005786 GO:0004084|GO:0009081
Cpe11g00101 368 PIRSF BCAT1 262 368 IPR005786 GO:0004084|GO:0009081
Cpe11g00101 368 PIRSF BCAT1 46 262 IPR005786 GO:0004084|GO:0009081
Cpe11g00101 368 CDD BCAT_beta_family 99 355 IPR033939 GO:0004084|GO:0009081
Cpe11g00101 368 PANTHER BRANCHED-CHAIN-AMINO-ACID AMINOTRANSFERASE 262 367 - -
Cpe11g00101 368 Gene3D - 67 227 IPR043131 -
Cpe11g00101 368 PANTHER BRANCHED-CHAIN-AMINO-ACID AMINOTRANSFERASE 29 261 - -
Cpe11g00101 368 SUPERFAMILY D-aminoacid aminotransferase-like PLP-dependent enzymes 57 364 IPR036038 GO:0003824
Cpe11g00101 368 Gene3D - 264 368 IPR043132 -
Cpe11g00101 368 Pfam Amino-transferase class IV 262 325 IPR001544 GO:0003824
Cpe11g00101 368 Pfam Amino-transferase class IV 126 260 IPR001544 GO:0003824
Cpe11g00101 368 Gene3D - 228 262 IPR043132 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00101 K00826 E2.6.1.42, ilvE; branched-chain amino acid aminotransferase [EC:2.6.1.42] - csv:101214004 565.459
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00506 Cpe-Chr10:2974494 Cpe11g00101 Cpe-Chr11:550606 2.74E-142 wgd
Cpe11g00101 Cpe-Chr11:550606 Cpe19g00699 Cpe-Chr19:5488239 1.43E-142 wgd
Cpe11g00101 Cpe-Chr11:550606 Cpe07g00540 Cpe-Chr7:3582573 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g593 . . . . . . . . Cmo05g00119 . . . . Car12g00561 . . . Bhi04g00472 . . . . . . . . . . . . . Cone6ag1482 . Cone8ag0180 Cone12ag0187 . . . . . . . . . . . . . . . . Cma05g00115 . . Cpe11g00101 . . . . . . . . . . . . . . . . Csa02g01862 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007941 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 2 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe11g00101 Cpe_Chr11 FPKM 12.488158 13.137384 18.446972 15.70262 12.548837 11.306917 14.339599 15.738359 16.171984 17.954481