Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00106 ATGAAGTCGATGAACGAGAATGAGAATAACAATAATAATAATAATAATAATAACAACAACAGCAGCAGCAGTTGGTTGGGATTCTCTCTTTCTCCCCACATGAAAATGGAGGTTACTGCCTCTGATCATCCCTACAATCATCACCATTCTCACTCTGCTACCAATGCCTTCTACTTGTCTCCTCATTACAACAATAACTCTGAAATCTTTTATGGGATTGCTGAAAATGCTTCTCTTCATCACTCTGCTGCTGCTTCACTCTCTGTAATGCCGCTCAAATCCGATGGCTCACTCTGTATTATGGAAGCCCTTTCAAGATCACAAACCGAAGGGATGGTTCCGAGTTCTTCGCCGAAGCTAGAGGATTTTCTGGGTGGTGCAACAATGGGGGGTCGAGGCTATTTCAATCAAAATGCTGAATCCGAACCCGACAGGGAACATTCCTTGGACCTTCTTCATAGACCCATTAGAGAAAATCAACAGCAGCAGATTTTGATGCAAAATACCCATCAATACTACTCAGGGCTGGTTCCGTCTTCCATTGGAATTGGAGGTTGCGATCCTCAAATTCTACCCGCTGACGACGACGAAATCCCTTGCCTTAGAAACTGGGTCTCTCGTTCTCACTATGCCGGCGCCCATAATAATCTGGACCAACAAATTACTGGAGGCGGCGGAGGCGCTCTCGTACATGACGGCGGCAGTGGCGGTAACTCTGTCTCCATTGGTGGAATGAGTTGTGGGGAGTTGCAGTCGTTGAGCTTGTCGATGAGCCCAGGTTCTCAATCGAGCTCATTCACGGCTTCTGGCCAGATCTCCCTTACTGGAGGCGACGGCGCCGTCGTAGAAACTAAAAAACGAGGCCCTGGAAAACTCTGCCAGAAGCAGCCCGTTCACCGCAAGTCCATCGATACTTTTGGCCAAAGAACCTCCCAATATCGTGGCGTCACCAGACACAGGTGGACTGGGAGATATGAAGCTCATCTCTGGGATAATAGTTGCAAGAAAGAAGGGCAAACAAGAAAAGGAAGACAAGCTAAACTCTATGTTTATTACTCAAAATTTGAAGGGGGATATGATATGGAAGAAAAAGCTGCAAGAGCTTACGATCTTGCTGCCCTCAAGTACTGGGGACCCTCCACGCATATTAACTTTCCTTTGGAGAATTATCAGACTGAACTGGAAGAAATGAAGAATATGAGCCGCCAGGAATATGTTGCCCACTTGAGAAGGAAAAGCAGTGGCTTTTCGAGGGGCGCTTCAGTTTTCCGTGGAGTCACAAGGCATCACCAACATGGAAGATGGCAGGCGAGGATTGGGAGAGTTGCTGGAAACAAAGATCTTTACCTTGGGACATTTAGCACGCAAGAGGAAGCGGCTGAGGCTTACGACATTGCAGCAATCAAATTCCGCGGTGTAAATGCGGTCACCAACTTTGACATTTCAAGATATGACGTCGAGAGAATCATGGCCAGCAATACCCTACTGGCTGGCGAGCTTGCCAGAAGGAACAAGGAGGTGGTCGTCGACCCAAGAACTGATGCTGCTGCTGCTGCTGCTGCTGCTGCCGCCTACGATTCCTCTGTTGCATCTAACAATAATGGCGGGATTGAAATGAATCCAGACGGCAATGGTACGGATTGGAAGATGGCATTGTATCAGAATCCTTCTCATCAACAACACCAACAGGGAGCTGCTACTTGTGTTGCTGAATCACTAGATCATCATCATAATAAGTCGATGGCCGCGTCGGGAGACTATCCAAATGCTTCGTTTTCGATGGCATTGCAAAACTTGATCGGTATCGAAGCGTTGAACACTACTAACAGTCATGGAATTGAAGATGATTTGAACAAACAAGTAACGCATTTTTCAAATTCGTCGTCGCTGGTGACGAGTTTGAGTAGCTCGAGAGAAGGTAGCCCTGACAAGACGAATGCGTCAATGGCGTCGAAGCTAATTGGTGCAACAAGCGGGGTGGGGTCTTGGTACCCAACCCCACAGCAGCTGAGGCCAACAGCCATTTCCATGGCACATTTGCCTGTGTTTGCAGCTTGGAATGACACTTGA 2070 47.49 MKSMNENENNNNNNNNNNNNSSSSWLGFSLSPHMKMEVTASDHPYNHHHSHSATNAFYLSPHYNNNSEIFYGIAENASLHHSAAASLSVMPLKSDGSLCIMEALSRSQTEGMVPSSSPKLEDFLGGATMGGRGYFNQNAESEPDREHSLDLLHRPIRENQQQQILMQNTHQYYSGLVPSSIGIGGCDPQILPADDDEIPCLRNWVSRSHYAGAHNNLDQQITGGGGGALVHDGGSGGNSVSIGGMSCGELQSLSLSMSPGSQSSSFTASGQISLTGGDGAVVETKKRGPGKLCQKQPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQAKLYVYYSKFEGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQTELEEMKNMSRQEYVAHLRRKSSGFSRGASVFRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVNAVTNFDISRYDVERIMASNTLLAGELARRNKEVVVDPRTDAAAAAAAAAAYDSSVASNNNGGIEMNPDGNGTDWKMALYQNPSHQQHQQGAATCVAESLDHHHNKSMAASGDYPNASFSMALQNLIGIEALNTTNSHGIEDDLNKQVTHFSNSSSLVTSLSSSREGSPDKTNASMASKLIGATSGVGSWYPTPQQLRPTAISMAHLPVFAAWNDT 689
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 586597 590590 - Cp4.1LG11g01170.1 Cpe11g00106 476900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00106 689 CDD AP2 311 386 IPR001471 GO:0003700|GO:0006355
Cpe11g00106 689 CDD AP2 421 482 IPR001471 GO:0003700|GO:0006355
Cpe11g00106 689 ProSiteProfiles AP2/ERF domain profile. 422 480 IPR001471 GO:0003700|GO:0006355
Cpe11g00106 689 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 21 687 - -
Cpe11g00106 689 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 21 687 - -
Cpe11g00106 689 Gene3D AP2/ERF domain 311 388 IPR036955 GO:0003700|GO:0006355
Cpe11g00106 689 Gene3D AP2/ERF domain 422 482 IPR036955 GO:0003700|GO:0006355
Cpe11g00106 689 ProSiteProfiles AP2/ERF domain profile. 312 386 IPR001471 GO:0003700|GO:0006355
Cpe11g00106 689 SMART rav1_2 422 486 IPR001471 GO:0003700|GO:0006355
Cpe11g00106 689 SMART rav1_2 312 392 IPR001471 GO:0003700|GO:0006355
Cpe11g00106 689 PRINTS Ethylene responsive element binding protein signature 368 388 IPR001471 GO:0003700|GO:0006355
Cpe11g00106 689 PRINTS Ethylene responsive element binding protein signature 313 324 IPR001471 GO:0003700|GO:0006355
Cpe11g00106 689 Pfam AP2 domain 312 378 IPR001471 GO:0003700|GO:0006355
Cpe11g00106 689 Pfam AP2 domain 421 472 IPR001471 GO:0003700|GO:0006355
Cpe11g00106 689 SUPERFAMILY DNA-binding domain 311 388 IPR016177 GO:0003677
Cpe11g00106 689 MobiDBLite consensus disorder prediction 1 26 - -
Cpe11g00106 689 SUPERFAMILY DNA-binding domain 421 482 IPR016177 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01743 Cpe-Chr2:14248478 Cpe11g00106 Cpe-Chr11:586597 1.92E-120 dispersed
Cpe11g00106 Cpe-Chr11:586597 Cpe16g00890 Cpe-Chr16:8370460 6.52E-109 dispersed
Cpe18g00584 Cpe-Chr18:6264092 Cpe11g00106 Cpe-Chr11:586597 3.21E-80 dispersed
Cpe04g01307 Cpe-Chr4:10746802 Cpe11g00106 Cpe-Chr11:586597 5.64E-07 transposed
Cpe01g00784 Cpe-Chr1:4588880 Cpe11g00106 Cpe-Chr11:586597 1.34E-07 transposed
Cpe10g00499 Cpe-Chr10:2922938 Cpe11g00106 Cpe-Chr11:586597 2.74E-159 wgd
Cpe11g00106 Cpe-Chr11:586597 Cpe19g00692 Cpe-Chr19:5444619 0 wgd
Cpe11g00106 Cpe-Chr11:586597 Cpe02g00238 Cpe-Chr2:1220356 3.30E-126 wgd
Cpe11g00106 Cpe-Chr11:586597 Cpe06g00218 Cpe-Chr6:1159931 2.98E-134 wgd
Cpe11g00106 Cpe-Chr11:586597 Cpe07g00532 Cpe-Chr7:3517977 9.13E-34 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50192 PF00847 AP2 2.50E-06 CL0081 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00106 K09285 - csv:101212797 1045.03