Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00111 ATGCCCATCTACCACCCCTCCATTTGTACACAACGGGATCCCAAGCTCCTCGTCGGCTGCGGTGCACACATTCTAGATCTCCAAACTGTGGTCAAAGATGGCATTCTTGGCGGTGCCCAGAAATTGGATCTCAAGGAGATGATTGAAGAGCTGGAGTCGTCCATAGAGGTCCCATCGGTGTTCATTTGTCCAATCTCGCTCGAGCCCATGCAAGATCCAGTCACCCTCTGCTCCGGGCAGACCTACGAGCGGTCCAACATTCTCAAATGGTTCTCTTTAGGCCACTTGACTTGTCCCACAACAATGCAAGAGCTTTGGGACGATTCCGTCACACCGAATCGGACCCTTCACCAGCTGATTCACACCTGGTTTTCGCAGAAGTACTTGGCATTGAAGAAGAGATCAGAGGACGTGCAGGGGAGAGTTTTAGAGCTCTTGGATTCGTTGAAGAAGGTCAAGGGCCAAGCTAGGGTTCAGTCCCTTAAGGATCTCCGACATGTCGTCACCGCCCATTCCTCCGCCAAGAAGATGGTGGTCGACAACGGCGGTGTTGCTCTAATCTCCTCTCTTTTGGGTTCTTTCACTTCCCACGCAGTTGGGTCGGAAGGCGTGGGGATTCTCGTCAATTTGGATCTGAATTCAGAGTTGAAGAAGAATCTGATTCAACCCACCAGAATATCCCTAATTGCAGATATTTTAAACGAAGGGTCCATCGAAACCAAGATTAATTGCACCAAATTCATCAAGATGTTGACGGAGGGCGATGCTTCAACAATAGAGAACGTTTCGAGTTTAAGTCTCCTCGTCGGATTGTTGAGAATGGTAAAGGATCAAAGACATCCAAACGGAGTAACCGCCGCACTCACTTTACTCCGAACGCTTTGTTCAAACGAATCAATCAGAAAGCAACTCGTTGGCATCGGTGCCGTCGCGAAACTCGGTGGCGCTCTCTCCGGCTTAAACGCCGAAAGCTTGGAGTCAGCGCTTTATATTCTCGACGTTTTATCGTCCCTTCCAGAGGGGAGATTAGCGTTGAAGAATTGTGAAGATACAGTTAGAAATTTGGTGAAATTGTTAATGAAAGTATCGGAGATTTGTACAAGATTTGCGCTATCGATTTTGTGGGCGGTGTTCAAGCTAGCGCCGGAGGAATGTTCGGTGCTCGCGGTGGAGGCGGGATTAGCGGCAAAATTGCTGCTTGTGATCCAAAGTGGGTTCAATCCAGAACTGAAACAGAGATCTGCAGAGCTATTGAAATTGTGTAGTCTAAATTACCCAGATTCTATCTTCATTTCTAAATGTAAGCTTACGAGAACTATACAATAA 1326 47.74 MPIYHPSICTQRDPKLLVGCGAHILDLQTVVKDGILGGAQKLDLKEMIEELESSIEVPSVFICPISLEPMQDPVTLCSGQTYERSNILKWFSLGHLTCPTTMQELWDDSVTPNRTLHQLIHTWFSQKYLALKKRSEDVQGRVLELLDSLKKVKGQARVQSLKDLRHVVTAHSSAKKMVVDNGGVALISSLLGSFTSHAVGSEGVGILVNLDLNSELKKNLIQPTRISLIADILNEGSIETKINCTKFIKMLTEGDASTIENVSSLSLLVGLLRMVKDQRHPNGVTAALTLLRTLCSNESIRKQLVGIGAVAKLGGALSGLNAESLESALYILDVLSSLPEGRLALKNCEDTVRNLVKLLMKVSEICTRFALSILWAVFKLAPEECSVLAVEAGLAAKLLLVIQSGFNPELKQRSAELLKLCSLNYPDSIFISKCKLTRTIQ 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 627309 628634 - Cp4.1LG11g01130.1 Cpe11g00111 476905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00111 441 Gene3D - 128 437 IPR011989 -
Cpe11g00111 441 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 127 IPR013083 -
Cpe11g00111 441 ProSiteProfiles U-box domain profile. 56 130 IPR003613 GO:0004842|GO:0016567
Cpe11g00111 441 SUPERFAMILY RING/U-box 53 127 - -
Cpe11g00111 441 Pfam U-box domain 57 127 IPR003613 GO:0004842|GO:0016567
Cpe11g00111 441 SMART Ubox_2 60 123 IPR003613 GO:0004842|GO:0016567
Cpe11g00111 441 SUPERFAMILY ARM repeat 145 426 IPR016024 -
Cpe11g00111 441 CDD RING-Ubox_PUB 61 103 IPR045210 -
Cpe11g00111 441 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 30 31 440 - -
Cpe11g00111 441 PANTHER WDSAM1 PROTEIN 31 440 IPR045185 GO:0061630
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe07g00525 Cpe11g00111 CCT
Cpe06g00211 Cpe11g00111 CCT
Cpe02g00230 Cpe11g00111 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g00111 Cpe-Chr11:627309 Cpe01g00435 Cpe-Chr1:2508832 8.68E-38 dispersed
Cpe11g00111 Cpe-Chr11:627309 Cpe02g00230 Cpe-Chr2:1183807 0 wgd
Cpe11g00111 Cpe-Chr11:627309 Cpe06g00211 Cpe-Chr6:1124965 6.84E-150 wgd
Cpe11g00111 Cpe-Chr11:627309 Cpe07g00525 Cpe-Chr7:3466551 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00111 - - csv:101211594 764.992