Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00141 ATGGGATCAAGCATGAAGGTTCATCAGTTCGCACGTGGATTTTGGGACGAACCCTCCCTCTCCCTCGGCTGCAAGCGCTTACGCCCTCTTGCCCCTAAGCTTCAACAACATCAACAACAACATCAACAACAACATCAACAACAACATCCCTCCTCCTCCTCCTCCTCCGATCATAACACTACCACCACCACGCTCACCACTTTGGACCTCAAGACCTTCATCCGACCCGATTGTGGCCCCAGAAAACTGGGTTCCTCTCATGACCACAACAAAGGCTCTTCTTCCTCTTCTTCCTCTTCTTCCCCCCAGGTAACAACTAACCGCAACTATTATCTACCTTCTCTTGGGGTTTGGGGTTTGGGGTTTGGGGTTTGTTTAAAACTGAGAAATTACCCCGGGGGTTCAATCAAATTTGTGCAGACGGCAGTGGAGACACATCCCGGGGGGACGAGGTGGAATCCAACCCAAGAACAGATTGGGATATTGGAGATGCTGTACAGCAGAGGAATGAGGACTCCCAATGCCCAACAAATCGAGCACATCACTGCCCAGCTCGGCAACTACGGCAAGATCGAAGGCAAGAACGTGTTCTATTGGTTTCAGAATCACAAAGCCCGTGAGCGACAGAAACAGAAGCGCAACAGCCTGGGTCTTCCCCACTCCCCCAGAACTCCCCCTCCTCCCATCCTCCCCACCTTCCACCCTTCCTTCCCGGGAGAGGAAGACAGTCCGTACAAGAAGAAGTGCTTGTACTGGGGGTTTGAGTGTTTCGTACAACATAAC 783 51.85 MGSSMKVHQFARGFWDEPSLSLGCKRLRPLAPKLQQHQQQHQQQHQQQHPSSSSSSDHNTTTTTLTTLDLKTFIRPDCGPRKLGSSHDHNKGSSSSSSSSSPQVTTNRNYYLPSLGVWGLGFGVCLKLRNYPGGSIKFVQTAVETHPGGTRWNPTQEQIGILEMLYSRGMRTPNAQQIEHITAQLGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPPPPILPTFHPSFPGEEDSPYKKKCLYWGFECFVQHN 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 767274 768145 + Cp4.1LG11g01360.1 Cpe11g00141 476935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00141 261 CDD homeodomain 150 211 IPR001356 GO:0003677
Cpe11g00141 261 PANTHER WUSCHEL-RELATED HOMEOBOX 4 5 96 IPR044186 GO:0003700|GO:0010067|GO:0010087|GO:0051301
Cpe11g00141 261 PANTHER WUSCHEL-RELATED HOMEOBOX 4 141 259 IPR044186 GO:0003700|GO:0010067|GO:0010087|GO:0051301
Cpe11g00141 261 MobiDBLite consensus disorder prediction 220 234 - -
Cpe11g00141 261 SUPERFAMILY Homeodomain-like 146 216 IPR009057 -
Cpe11g00141 261 MobiDBLite consensus disorder prediction 209 237 - -
Cpe11g00141 261 Pfam Homeodomain 150 209 IPR001356 GO:0003677
Cpe11g00141 261 ProSiteProfiles 'Homeobox' domain profile. 145 210 IPR001356 GO:0003677
Cpe11g00141 261 SMART HOX_1 147 214 IPR001356 GO:0003677
Cpe11g00141 261 MobiDBLite consensus disorder prediction 33 70 - -
Cpe11g00141 261 Gene3D - 149 216 - -
Cpe11g00141 261 MobiDBLite consensus disorder prediction 89 105 - -
Cpe11g00141 261 MobiDBLite consensus disorder prediction 32 105 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe07g00494 Cpe11g00141 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g00141 Cpe-Chr11:767274 Cpe20g00149 Cpe-Chr20:844047 3.03E-28 dispersed
Cpe11g00141 Cpe-Chr11:767274 Cpe07g00494 Cpe-Chr7:3226239 1.38E-57 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50198 PF00046 Homeodomain 1.20E-18 CL0123 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00141 - - cpep:111805075 343.969