Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00142 ATGCAAGGGCAAAGGAGTAGTGTCGGTTCATTGTCAGAAACGATAAACTTTGAACATGGATCTTCATCAAATAATCCTGGTAACCAACCAGTTTACTGGAATAACATGTGGAATCCAGCAGAAAACCGTATACCAGATTATTTATTGCCTACTCCTGATGTAAATTCTGGATATGTTAGCTCTGTAAGCCATGAACAACGAAGTTTGAGCAGATGGAGCTTGGGTGAACCTAGCTCTTGTGATATGCAAACTGATTTGCTGCCTGATGAGCAGAAAGCTGAGCTTGGATGGTCTTCGATGACTCGTGATGCAGATGGTCCCTTCACCGAAAACCAACTCTGTGAGCCATCAAATAATCCTTCACTGGGTCATGTGAATTTGAGCCCACTGATTATACAAAATTCTAATTCTAATAGTATTCCTCATACTCTGAATTTAAATGCAAGTTTTGCTAGTCATGGAGGTGACAGTAGCAGAGTTAACGAAGGTACTAACGTGTATAAATCTAGTGGATCAGAAGAAGGGGGGATTTTATGTTCTAGTGCATCTGATCCTCTTTTACTTCCTTCTGGAAGTAGTGGACTTCCAATGGTTGCAAATGATGGTAGAGCAAGCTCTTCCTTGGAAGGTCGTCGTGCACCCTGCAAAAGAAAATCTATTGAAGGAAATGTTGCACAGTCCTCTTTAAGCGGAAGCAGTAGCTACTCTCAGCATATTGAAAGGGGTGCTGAGCCCCCTCTTCCAGCATTACCTGGTCGCTACAACACAGGAAGTAGGTTAAGCATACCTGCTCCACTAGCACGAATGAATCAAGCCCCTATACGAGGTACAGGTGAATTGATGTCCAACAGCTTCTCTGAGTCGATTGTTGCGGAAAACTCAGACAGTTCTCAAAGAAACTATCGTATACGGATTAGTTCATCAAATGCACAAGATTCTTTTGCATCGGTAGGAACTGTTGTTAGGCATCCTCGGGGCCCATCTTCCCAGCCGCCAGCAAGACTTCTACCTGCTGAGCATGTATTAGACTTGAGGCCAGCAGCAGCTGTAGACAATTTATCTGCTCAAGGTCAGCCTATTATGATACACGTGCCTGCTTTATCTCGAAGTCTGCAGCCATATAGGTGGATTAGAAGTTCTACTTCAAGAAGTGGTAATTCATCAAGCTCTGCAGGAGAGAGGCAGGTGGTGCAACGTGAGGAGGTGAGACCAAACAACATGGGAAGAAACGTATCTGAACATCCTATGTTTGTCCCAGCAAATGAGCTGAGGAATATGGTTCAAAATCAATCAAGTAGAGGTTTAACATCTTCGAGCTTGCCCATTCCTGGAAATGTTGCTTCTACATCCAGGGTTGGTTCAAGTTCAGGGGTCCATCCCTCTTCTGGACCTTGGATTCCTCCTGAAAGTTCTCCCACACAGTTTCCCAGGAGGTTAACAGAATATGTTCGTAGGCAGCTATTTTCTTCTGCAACAAATGAGTCTGGGGGAAGGATAAATAATTATTCACAGCGATCAGGTTCTACTTTGGCTCAGGATATGGTTCTTTCATCTGGATCTGACCGCCGGGGGCACCATTTATTGCAACCGAGGTCAGCATTACGGATGGAAAGAAGAGGTGATGGTGGACTTGGTCTTCCCTATTCATTACGAACCTTGGCTACTTCTAATGAAGGAAGTGACAACAATAGACTTGTATCTGAGATTCGCAATGTCTTGGGCCTTGTTCGCAGGGGTGAAAGCTTACGAGTTGAGGATGTGATGATCCTGGACCAGTCACTATTTTTTGGGATGGCTGATATGTATGATAGGCACAGGGATATGCGTCTGGACGTTGATAACATGTCATATGAGGAATTGTTGGCATTGGAAGAGCGTATCGGAAATGTCAACACAGGACTAAGTGAAGAGACGATAATTGGTCGACTGAAACAAAAGAAGCATGTGAATGCTGTTGAATCACAGGTGGAGGAAGAACCATGCTGTGTTTGTCAGGAGGAGTACGTGGAAGGAGACGACATGGGAACACTGGAATGCGGGCACGATTTCCACACGGATTGCATTAAGCAGTGGTTGATGCAGAAGAATCTGTGTCCCATCTGCAAAACAACTGGCATAGCAAGCCGAGAATGA 2133 44.59 MQGQRSSVGSLSETINFEHGSSSNNPGNQPVYWNNMWNPAENRIPDYLLPTPDVNSGYVSSVSHEQRSLSRWSLGEPSSCDMQTDLLPDEQKAELGWSSMTRDADGPFTENQLCEPSNNPSLGHVNLSPLIIQNSNSNSIPHTLNLNASFASHGGDSSRVNEGTNVYKSSGSEEGGILCSSASDPLLLPSGSSGLPMVANDGRASSSLEGRRAPCKRKSIEGNVAQSSLSGSSSYSQHIERGAEPPLPALPGRYNTGSRLSIPAPLARMNQAPIRGTGELMSNSFSESIVAENSDSSQRNYRIRISSSNAQDSFASVGTVVRHPRGPSSQPPARLLPAEHVLDLRPAAAVDNLSAQGQPIMIHVPALSRSLQPYRWIRSSTSRSGNSSSSAGERQVVQREEVRPNNMGRNVSEHPMFVPANELRNMVQNQSSRGLTSSSLPIPGNVASTSRVGSSSGVHPSSGPWIPPESSPTQFPRRLTEYVRRQLFSSATNESGGRINNYSQRSGSTLAQDMVLSSGSDRRGHHLLQPRSALRMERRGDGGLGLPYSLRTLATSNEGSDNNRLVSEIRNVLGLVRRGESLRVEDVMILDQSLFFGMADMYDRHRDMRLDVDNMSYEELLALEERIGNVNTGLSEETIIGRLKQKKHVNAVESQVEEEPCCVCQEEYVEGDDMGTLECGHDFHTDCIKQWLMQKNLCPICKTTGIASRE 710
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 775512 781250 + Cp4.1LG11g01310.1 Cpe11g00142 476936

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00142 710 MobiDBLite consensus disorder prediction 429 474 - -
Cpe11g00142 710 MobiDBLite consensus disorder prediction 1 30 - -
Cpe11g00142 710 MobiDBLite consensus disorder prediction 379 415 - -
Cpe11g00142 710 MobiDBLite consensus disorder prediction 221 239 - -
Cpe11g00142 710 SUPERFAMILY RING/U-box 655 704 - -
Cpe11g00142 710 Pfam Ring finger domain 661 702 IPR001841 -
Cpe11g00142 710 MobiDBLite consensus disorder prediction 192 251 - -
Cpe11g00142 710 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 706 IPR045191 GO:0061630
Cpe11g00142 710 SMART ring_2 661 701 IPR001841 -
Cpe11g00142 710 MobiDBLite consensus disorder prediction 153 173 - -
Cpe11g00142 710 ProSiteProfiles Zinc finger RING-type profile. 661 702 IPR001841 -
Cpe11g00142 710 MobiDBLite consensus disorder prediction 429 461 - -
Cpe11g00142 710 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MBR2-LIKE ISOFORM X1 1 706 - -
Cpe11g00142 710 MobiDBLite consensus disorder prediction 379 395 - -
Cpe11g00142 710 CDD RING-H2_TTC3 660 702 - -
Cpe11g00142 710 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 625 705 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00142 - - - csv:101203243 1202.96
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g01128 Cpe-Chr9:9689616 Cpe11g00142 Cpe-Chr11:775512 7.08E-33 dispersed
Cpe11g00142 Cpe-Chr11:775512 Cpe20g00137 Cpe-Chr20:762209 1.19E-32 dispersed
Cpe11g00142 Cpe-Chr11:775512 Cpe07g00492 Cpe-Chr7:3214700 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g743 . . . . . . . . Cmo05g00171 . . . . . Sed11g0938 . . Bhi04g00370 Tan02g1797 . . . . . Cla08g01584 Cam08g2081 Cec08g1664 Cco08g1793 Clacu08g1767 . Cre08g1552 Cone4ag1588 Cone7ag1361 Cone17ag0852 Cone20ag0198 . . . . . . . . . Bpe05g00370 . . . . . . Cma05g00173 Car05g00146 . Cpe11g00142 . . . . . . . . . . . . . . . Lsi08g01487 Csa02g01933 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002893 2 4 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 9 6 2 55
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe11g00142 Cpe_Chr11 FPKM 20.207914 21.508247 63.528858 61.509693 149.027573 168.990585 144.53952 42.933498 44.072521 40.604515