Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00147 ATGGATGTTCTGACTCAGATGGAAAATTTTTCTGAGTTCTTTGAATTTACCGAACTGCCATCTTGGCCTTTTTCTTTTGGGAGTTCCAATATTGGTGCCACTTCACATCGCTTTCAAAACCCAACTCCCCCCATTCTCCCTTCTTATGCTCTCTCATCCACCGCTTCAATGAACAACGCCACTCACCCTCTTGCACCACCCTGTCCTCCACCCCATTCCCCTGCCGCCACCCCAAACTCCCACACGAAGCAGCAGCAGCAAGATTCAATGGGCGCGATGAGGGAGATGATATATAGGATAGCGGCGATGCAGCCGATCCAGATTGACCCAGAAGCGGTTAAGCCACCAAAGCGGCGGAATGTGAAGATATCAAAAGATCCACAGAGCGTAGCGGCGCGGCATAGAAGAGAGAGAATAAGCGAGAGAATTAGAATACTTCAAAGAATAGTCCCTGGCGGCACCAAAATGGACACCGCTTCCATGTTAGACGAGGCCATTCATTACGTCAAGTTCTTGAAAAGCCAAGTCCAATCCCTCCAAATAGCTGCCAACAACCGCCCCTCCTCTGCCTTTGGCTTTCCGGCGGCGATGTCGGCCGGTGGAAGCAACTACAAGCAATTCCAGTTTGCTCAAACTGGACATGAGCACGTGGAGGATGCTTGA 663 50.53 MDVLTQMENFSEFFEFTELPSWPFSFGSSNIGATSHRFQNPTPPILPSYALSSTASMNNATHPLAPPCPPPHSPAATPNSHTKQQQQDSMGAMREMIYRIAAMQPIQIDPEAVKPPKRRNVKISKDPQSVAARHRRERISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKSQVQSLQIAANNRPSSAFGFPAAMSAGGSNYKQFQFAQTGHEHVEDA 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 809628 810418 + Cp4.1LG11g01470.1 Cpe11g00147 476941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00147 220 Pfam Helix-loop-helix DNA-binding domain 133 172 IPR011598 GO:0046983
Cpe11g00147 220 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 127 180 IPR036638 GO:0046983
Cpe11g00147 220 SMART finulus 129 178 IPR011598 GO:0046983
Cpe11g00147 220 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 35 208 IPR045843 GO:0003700|GO:0006355
Cpe11g00147 220 MobiDBLite consensus disorder prediction 57 89 - -
Cpe11g00147 220 Gene3D - 122 189 IPR036638 GO:0046983
Cpe11g00147 220 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 123 172 IPR011598 GO:0046983
Cpe11g00147 220 PANTHER BASIC HELIX-LOOP-HELIX (BHLH)-LIKE PROTEIN 35 208 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe06g00164 Cpe11g00147 CCT
Cpe06g00164 Cpe11g00147 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00343 Cpe-Chr10:1998127 Cpe11g00147 Cpe-Chr11:809628 2.52E-37 dispersed
Cpe11g00147 Cpe-Chr11:809628 Cpe19g00534 Cpe-Chr19:4530320 1.87E-48 dispersed
Cpe11g00147 Cpe-Chr11:809628 Cpe06g00164 Cpe-Chr6:898190 2.38E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50201 PF00010 HLH 1.60E-06 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00147 - - cmos:111462825 357.451