Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00174 AAAAGAATAAAAGATCAAGGAAACCTCACTTCACTCACCCATCGCGCAAGCATATTCTGCATGCGCAAGGCACGTGAGATGCGAGTCAAAAGCCAGTTGGCGACCAAGCTGCCGGAAATGGACATCAAAGAAGCAATCAGAAACCATGGCGACGTCGCCATGGCCATCACCAAGCGCATTCTCCAACACGACAAAGCCAAGGCTTCCAACGTTGTCATCTCGCCCTTGTCGATCTACGTGCTTCTCAGCCTTGTCGCTGCCGGCTCCAAGGGCCCCTCGCTGGATCAACTTCTGTCCTTCCTCAAATCAAACTCCATCGACAACCTCAACGCCTTCGCTTCTCATATCATAGACAAGGTCTTCGCCGATGCCTCCTCCGGCGGCGGACCTCGCCTCGCATTTGCCAATGGCGTTTGGATCGATCAATCACTTTCTCTCAAGCCTTCTTTCCAACAGGCTAATAAAGTGATCTCGGAAGTGAACTCATGGGTTGAAAAAAACACTAATGGGCTTATCAAAGAGATTCTTCCCCCTGGATCAGTGGACAGTTTCACTAGGCTCATCCTTGCCAACGCACTCTACTTCAAAGGGGCATGGGAGAAGAAATTTGATGCTTCGAAAACAGTGAAGCGTGATTTCTACCTTGTTGATGGGAGCTCAGTTGAAGCGCCCTTTATGACCGACAAGGAGGACCAATATGTAGCTGTGTTCGATGGATTTAAGGTTCTTGCATTGCCGTACAGTCAAGGTTCTGACCCACGTCGTTTTTCTATGTACTTCTTTCTCCCAGATAGCAAGGATGGACTGGGAAGTTTGATTGAAAAGTTAGATTCTGAGGCTGGGTTCATCGACCGCCACATTCCACGTAGAAAACATGAGCTGGGGAGATTTATGATTCCAAAGTTTAAAATTTCCTTTGGGATTGAAGTTTCCGATGTCTTAAAGAAGCTAGGATTGGTGCTGCCTTTCTATGAAGGAGGGTTGCTAGAAATGGTGGAGCCCCCAATGGCTCGAAACCTTAGTGTTTCTAAAATATTCCACAAGGCGTTTATTGAGGTTAATGAAGAAGGCACCGAAGCTGCAGCTTCTTCAGCTGCTGTTATACGATTTATGAGCGCGCCTATAGGTTTGATAGAGTTCGTTGCCAATCACCCGTTCTTATACTTGATTAGGGAAGATAAGTCAGGAACTTTACTTTTTATTGGGCAGCTGCCGGAAATGGACATCAAAGAAGCAATCAGAAACCATGGCGACGTCGCCATGGCCATCACCAAGCGCATTCTCCAACACGACGAAGCCAAGGCTTCCAACGTTGTCATCTCGCCCTTGTCAATCTACGTGCTTCTCAGCCTTGTCGCTGCTGGTTCCAAGGGCCCCCCGCTGGATCAACTTCTGTCCTTCCTCAAATCAAACTCCATCCACAACCTCAACGCCTTCGCTTCTCATATCATAGACAAGGTCTTCGCCGATGCCTCTTCCTGCGGCGGACCTTGCCTTGCATTTGCCAATGGCGTTTGGATCGATCAATCACTTTCTCTCAAGCCTTCTTTCCAACAGGCTGACGAAGTGATCTCGGAAGTGAACTCATGGGTTGAAAGAAACACGTATGGACTTATCAAAGAGATTCTTTCCCCTGGATCAGTGTGTAGTTCCACTCAGCTCATCCTTGCGAATGCACTCTACTTCAAAGCGGCATGGCAGCAGGCATTTGATGCTTCGAAAACAGTGAAGCGTGATTTCTACCTTGTTGATGGGAGCTCAGTTGAAGCGCCCTTTATGTCCGGCAAGAAGGACCAATATGTAGCTGTGTTCGATGGGTTTAAGGTTCTTGCATTGCCGTACAGTCAAGGTCCTGACCCGCGTCGTTTTTCTATGTACTTCTTTCTCCCAGATAGCAAGGATGGACTGGGAAGTTTGATTGAAAAGTTAGATTCTGAGCCTGGGTTCATCGACCGCCATATTCCACGTCAAAAACGTGAGCTGTGGGGATTTATGATTCCAAAGTTTAAAATTTCCTTTGGGATTGAAGTTTCCAATGTTTTAAAGAAGTTAGGATTGGTGTTACCATTTACCGAAGGAGGGTTGTTAGGAATGGTGGAGTCCCCAATGGCTCAAAACCTTCGTGTTTCTAAAATATTCCACAGGGCGTTTATTGAGGTTAATGAAGAAGGCACAGAAGCTGCAGCTTCTTCAGCTGTTACTATAAGAAGAGTAAGCATGCCTATAAATATAATAGACTTCATTGCCGACCGCCCGTTCTTGTATTTGATCAGGGAAGACAAATCAGGAACTTTGCTTTTCATTGGGCAGAATAAGGCTGATGAAGTGATTTCAGAAGTGAACTCATGGGCTGAAAAACAGACCAATGGATTTATCAAGGAAATTCTTGGCCCGAAATCAATTGGTAGTAGCACTATGCTTATTCTGGCAAATGCATTATATTTCAAAGGTGCTTGGGAACAAAAATTTGCTGCTTTAAACACAAAAGAATATAAATTCTACCTTCTTGATGGGAATTCACAGTATGAAGCAATGCCATACGAACAAGGACCTGCTCAGAGACGTCATTTCTCTATGTATATCTTTCTCCCGGATGAGAACGACGGATTGGCATCTTTGATTGAGAAATTGGATTCTGAACCTGGATTCATTGACCGACACATTCCGTACGAAAAACGTGAAGTCGAGAAATTCATGGTCCCAAAATTCAAAATTTCTTTTGGGGTTGAACTCACCGAAGTTTTGAAAGGGTTAGGGTTAACGTTGCCTTTTCATGGGGGTTTGACGGAAATGGTGGAACCTCAAGTGGGTGCGGAAGACCCTTTTGTTTCGGACATATTGCAAAAGTCATTCATTGAGGTGAATGAACAAGGCACAGAAGCTGCAGCTGTTTCACTTTCTCGTATGCTTGGCTGTTGTCTGTCTGATCTCACTGTCAGAATCGACTTTGTTGCTGACCATCCATTTTTATATGTCCTCAGAGAAAATATGACAGGGACTTTGCTTTTTGTTGGGCAGCTGCTAAATCCTCGTCTCTAA 3039 45.38 KRIKDQGNLTSLTHRASIFCMRKAREMRVKSQLATKLPEMDIKEAIRNHGDVAMAITKRILQHDKAKASNVVISPLSIYVLLSLVAAGSKGPSLDQLLSFLKSNSIDNLNAFASHIIDKVFADASSGGGPRLAFANGVWIDQSLSLKPSFQQANKVISEVNSWVEKNTNGLIKEILPPGSVDSFTRLILANALYFKGAWEKKFDASKTVKRDFYLVDGSSVEAPFMTDKEDQYVAVFDGFKVLALPYSQGSDPRRFSMYFFLPDSKDGLGSLIEKLDSEAGFIDRHIPRRKHELGRFMIPKFKISFGIEVSDVLKKLGLVLPFYEGGLLEMVEPPMARNLSVSKIFHKAFIEVNEEGTEAAASSAAVIRFMSAPIGLIEFVANHPFLYLIREDKSGTLLFIGQLPEMDIKEAIRNHGDVAMAITKRILQHDEAKASNVVISPLSIYVLLSLVAAGSKGPPLDQLLSFLKSNSIHNLNAFASHIIDKVFADASSCGGPCLAFANGVWIDQSLSLKPSFQQADEVISEVNSWVERNTYGLIKEILSPGSVCSSTQLILANALYFKAAWQQAFDASKTVKRDFYLVDGSSVEAPFMSGKKDQYVAVFDGFKVLALPYSQGPDPRRFSMYFFLPDSKDGLGSLIEKLDSEPGFIDRHIPRQKRELWGFMIPKFKISFGIEVSNVLKKLGLVLPFTEGGLLGMVESPMAQNLRVSKIFHRAFIEVNEEGTEAAASSAVTIRRVSMPINIIDFIADRPFLYLIREDKSGTLLFIGQNKADEVISEVNSWAEKQTNGFIKEILGPKSIGSSTMLILANALYFKGAWEQKFAALNTKEYKFYLLDGNSQYEAMPYEQGPAQRRHFSMYIFLPDENDGLASLIEKLDSEPGFIDRHIPYEKREVEKFMVPKFKISFGVELTEVLKGLGLTLPFHGGLTEMVEPQVGAEDPFVSDILQKSFIEVNEQGTEAAAVSLSRMLGCCLSDLTVRIDFVADHPFLYVLRENMTGTLLFVGQLLNPRL 1012
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 940975 948299 - Cp4.1LG11g01740.1 Cpe11g00174 476968

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00174 1012 ProSitePatterns Serpins signature. 380 390 IPR023795 -
Cpe11g00174 1012 PANTHER SERPIN-ZX-LIKE 845 1010 - -
Cpe11g00174 1012 PANTHER SERINE PROTEASE INHIBITOR, SERPIN 770 840 IPR000215 GO:0004867|GO:0005615
Cpe11g00174 1012 Gene3D - 199 402 IPR042185 -
Cpe11g00174 1012 PANTHER SERPIN-ZX-LIKE 47 404 - -
Cpe11g00174 1012 PANTHER SERPIN-ZX-LIKE 770 840 - -
Cpe11g00174 1012 Gene3D Antithrombin, subunit I, domain 2 69 355 IPR042178 -
Cpe11g00174 1012 SUPERFAMILY Serpins 414 770 IPR036186 -
Cpe11g00174 1012 ProSitePatterns Serpins signature. 747 757 IPR023795 -
Cpe11g00174 1012 Gene3D Antithrombin, subunit I, domain 2 899 971 IPR042178 -
Cpe11g00174 1012 Gene3D - 566 765 IPR042185 -
Cpe11g00174 1012 PANTHER SERPIN-ZX-LIKE 419 769 - -
Cpe11g00174 1012 Gene3D Antithrombin, subunit I, domain 2 766 839 IPR042178 -
Cpe11g00174 1012 SUPERFAMILY Serpins 771 1010 IPR036186 -
Cpe11g00174 1012 CDD serpinP_plants 414 770 - -
Cpe11g00174 1012 ProSitePatterns Serpins signature. 983 993 IPR023795 -
Cpe11g00174 1012 Pfam Serpin (serine protease inhibitor) 51 404 IPR023796 -
Cpe11g00174 1012 Pfam Serpin (serine protease inhibitor) 418 770 IPR023796 -
Cpe11g00174 1012 Pfam Serpin (serine protease inhibitor) 773 1010 IPR023796 -
Cpe11g00174 1012 PANTHER SERINE PROTEASE INHIBITOR, SERPIN 47 404 IPR000215 GO:0004867|GO:0005615
Cpe11g00174 1012 SMART serpin2 421 770 IPR023796 -
Cpe11g00174 1012 SMART serpin2 54 405 IPR023796 -
Cpe11g00174 1012 SMART serpin2 771 1010 IPR023796 -
Cpe11g00174 1012 Gene3D Antithrombin, subunit I, domain 2 436 722 IPR042178 -
Cpe11g00174 1012 CDD serpinP_plants 47 403 - -
Cpe11g00174 1012 Gene3D - 840 1012 IPR042185 -
Cpe11g00174 1012 SUPERFAMILY Serpins 41 404 IPR036186 -
Cpe11g00174 1012 PANTHER SERINE PROTEASE INHIBITOR, SERPIN 845 1010 IPR000215 GO:0004867|GO:0005615
Cpe11g00174 1012 PANTHER SERINE PROTEASE INHIBITOR, SERPIN 419 769 IPR000215 GO:0004867|GO:0005615
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00174 K13963 SERPINB; serpin B - egt:105971212 730.324
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g00173 Cpe-Chr11:937793 Cpe11g00174 Cpe-Chr11:940975 2.20E-84 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g831 . . . . . . . . Cmo05g00215 . . . . . Sed08g1817 . . Bhi04g00301 Tan02g1904 Cmetu03g1500 . Hepe10g0696 . Lcy13g2026 Cla08g01534 Cam08g2027 Cec08g1603 Cco08g1738 Clacu08g1716 . Cre08g1499 . . Cone17ag1302 . . Csa04g02371 . Cme03g02000 Blo17g00830 . Bda08g01319 . . Bpe05g00068 . . . . . . Cma05g00209 . . Cpe11g00174 . . . . . . . . . . . . . . . Lsi08g01436 Csa02g02005 Chy07g00100 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000825 2 1 6 2 1 2 0 2 2 4 1 2 3 4 4 7 2 3 2 2 4 1 2 5 5 4 4 7 5 1 90
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe11g00174 Cpe_Chr11 FPKM 1.36618 1.086921 0.56081 0.3258 2.950963 1.835519 3.254948 1.704091 1.687291 1.43767