Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00176 ATGTTTACCTCCACCCATATGATCACCAACACCACGGCACCGCCCTTGCCGGACCTTTCCTTGCAGATAAGCCCACCCTCTGATTCCGGCAGCAGCGGCAGCGATCTGAGCCATGAGAATGCTGCGTTTCTTCTTCCCCCCAAAACCCATTTCAAGGGAGATGCCAAAATGGGCTTTGGGATTAAAAGAAGAATTAGAGCTCCAAGAATGAGATGGACCACCACTCTTCATGCCCATTTCGTCCACGCTGTTCAGCTCCTTGGCGGCCATGACAGGGCAACACCAAAATCTGTACTGGAGCTGATGAATGTCAAAGATTTAACCCTAGCTCATGTAAAAAGCCATTTACAGATGTATAGAACAGTGAAAGGCACAGACAAAGCAACCGACACAGGCTTGAAGATCCAAAGTCAAGAAATTAATGTCAATGGAGCTTCAAGGTGTGAGAATTCTAACCCACCACTTACAATGCGGAAAAGCCCTAATCAAATCTGGAACTTGTTCTCTTCATCAATGGAGACAAATCGGGAGATGACGAGCAGATGGAGTCAACATAGCAACAACAGTATTGGAAACAACCAGCAGCAGCAGCAGAAGGACCGACAGAATGGAGACGCAAGCATGAAATTCTTGAGCGGCGTGAAGAAGCAGAGGTTGGAAGGTAGCTGCTTGTCGTTGTGTGATCATAATAATAACAATACTGTGAACTTAGACTTTAGCCTGGGATGCCCTAATTCTCTAACCATCCATTCTAATCCTTCTCAAATGCTAAACTCAAAACAAACCCTTTCTTTCTAG 798 45.74 MFTSTHMITNTTAPPLPDLSLQISPPSDSGSSGSDLSHENAAFLLPPKTHFKGDAKMGFGIKRRIRAPRMRWTTTLHAHFVHAVQLLGGHDRATPKSVLELMNVKDLTLAHVKSHLQMYRTVKGTDKATDTGLKIQSQEINVNGASRCENSNPPLTMRKSPNQIWNLFSSSMETNREMTSRWSQHSNNSIGNNQQQQQKDRQNGDASMKFLSGVKKQRLEGSCLSLCDHNNNNTVNLDFSLGCPNSLTIHSNPSQMLNSKQTLSF 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 957338 959822 + Cp4.1LG11g01630.1 Cpe11g00176 476970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00176 265 Pfam Myb-like DNA-binding domain 69 120 IPR001005 -
Cpe11g00176 265 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 68 121 IPR006447 GO:0003677
Cpe11g00176 265 PANTHER TRANSCRIPTION FACTOR KAN4-RELATED 28 253 - -
Cpe11g00176 265 Gene3D - 67 123 - -
Cpe11g00176 265 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 28 253 IPR044847 GO:0000976|GO:0006355|GO:0010158
Cpe11g00176 265 MobiDBLite consensus disorder prediction 1 38 - -
Cpe11g00176 265 MobiDBLite consensus disorder prediction 176 205 - -
Cpe11g00176 265 SUPERFAMILY Homeodomain-like 65 121 IPR009057 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe06g00132 Cpe11g00176 CCT
Cpe07g00452 Cpe11g00176 CCT
Cpe02g00150 Cpe11g00176 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g00176 Cpe-Chr11:957338 Cpe15g00191 Cpe-Chr15:1569966 4.23E-35 dispersed
Cpe19g01072 Cpe-Chr19:7321271 Cpe11g00176 Cpe-Chr11:957338 1.36E-20 dispersed
Cpe11g00176 Cpe-Chr11:957338 Cpe02g00150 Cpe-Chr2:772129 1.03E-39 wgd
Cpe11g00176 Cpe-Chr11:957338 Cpe06g00132 Cpe-Chr6:699448 4.18E-37 wgd
Cpe11g00176 Cpe-Chr11:957338 Cpe07g00452 Cpe-Chr7:2891447 1.98E-89 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50204 PF00249 Myb_DNA-binding 7.00E-06 CL0123 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00176 - - csv:101219131 281.182