Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00178 ATGGTTGATACCCTTTCCCTCTTCCGCCTTCCTCTTGCTTTAGCATCCATTTTCCATCAAGCACATTCTCAAATGCCAAGAAAATTCATCAATTTCCCAGAAAATTCAATCCAAACACCAATATTTTTACTTCTTCTAGCGTTAATACTCAAAGCAGCGGCTGAATGTTCAAAATCATGCAGTCCCAACCACACCCCATACGATTTTCCCTACCCATTCGGCTTCTCCGCCGGCTGCGCAATCCGCTTGGACTGCAATCACGACGGCGCCGCCACGATCGGGGAATTCCCTGTCCAATTAATCAACTCCGACCACATCAAAGTCGTCATCAAAGCCAAATGCAACCGCCGTTTGCACACAATCCGCCAATTCTTCAGCCCCCACTACGCCCCAACGGCCAACAACGCCATTCTTTTACAAAACTGTTCGTCTCCGATTTCGACTTGCCTTTTACCCACCACGATGGTTCAGACCAAATTCGAATCCCCCGATTGCTCTGTTAATCGCACTAGCATAAGCTGCTACACCCAAAACAACACCGCTTCCGTCGCTTTCTTGGACTTCAAAAACCTCACCGGAACCAACTGCGATTACCTTCTCTCCTCCATTTCCGCGGAGGCGCTCAACAGCAACACCTCTGCTGGAATTTCTCTGGAGATTCAGACGGTGGATCTGGGTTGGTGGCTGCAGGGACCCTGCCGCCAGTCCTGCCATAAAGATGCTAACTGTACGGAGCTTATATCGCCGAGTGACGGGAAGCTGTCTCACCGGTGCCGCTGCCGGGAAGGGTTGGTCGGCGATGGGTATTTGACCGGCACTGGCTGCCGGAAAGCTTCAAATTGCCATGCCACTAAGTACACTCTCGCCCAATGCGGAACATCAACAACTGCCACAAGAACCGCCGTCCTCGTCGGAACTATAGTCTCCGGAGCCTTCCTCCTCGTTACTCTCCTTCTATTCTGCTGCTTCATTCGCCGTCGTTCCAATCTCAAATCTATTCACCTCAACAAAATCACCAAACGCCGCCTCGCAGAAGCCACAACCGGCGCCGGCGTATCCACCATCCACCTCTACACCTACAAAGAGATTCTAAAGGCCACCCATAACTTCTCTGAGGACTACCGCCTCGGTACCGGCGCATACGCCTCCGTCTACGTCGGGAAATTACGCGGCGAATGGGTCGCAATTAAACGCCTAAAAAATCGAGACCCCGACACAATCCAACAAGTTTTAAACGAAATCAACCTCATCTCCTCTGTCAGCCACCCTAACCTCGTCCGCCTCCTTGGCTGCTCCATGGAATCAGGCGACCAAATCCTCGTCTACGAATTCATGCCCAACGGCACTCTGTTCCAACATTTACAAAAACAGAGGGGCACCGGCCTCCCCTGGCTTGTCCGCCTCAATATCGCCGTCGAAACCGCTAATGCAATCGCTCATCTCCATTCTGCAATTAACCATCCGATCTTCCACAGAGACATTAAATCCAGTAACATATTACTTGATCATAATCTCAAATCGAAAGTGGCGGATTTCGGGCTTTCGAGATTGGGGATGGCCGAAATTTCCCACATTTCCACGGCGCCTCAGGGGACACCGGGATATCTCGATCCACAGTACCATCAGGATTTTCATCTCTCCGACAAGAGCGACGTGTACAGCTTTGGCGTAGTCCTTGTCGAATTGATCACCGCCATGAAAGTGGTGGATTTCTGCCGGCCGAAAGACGAGGTCAATTTGGCCGGTCTGGCAGTCGATCGGATCGGAAATGGGCAACTGAGAGAAATTGTTGACCCGTTAATGGAGATGGAGTTAGACGAATGGGGAAGTTCGTCGGTGGAGAAGGTGGGGGAGGTGGCGTTCAGATGCCTGGCGTTTAATCGGGATGTAAGACCGTCGATGGTAGAGGTTGCGGCGGAGCTGGAGGAGATACGGCGGAGCCGGTGGGATGAAGGGGGAGTGAAATGTAAGGAAATAGTTGAAAGTGGAAGCTGGAAGTCTAGCCATGGAGGTGGGGATTACTTTTCAAGAGGCTCGGTCGAAGATTCATGGCTCAGTGAACAGAGCTCACCGTGTTCGAGTAGTTTGTTAAATAATATCCCTCTATGA 2109 51.26 MVDTLSLFRLPLALASIFHQAHSQMPRKFINFPENSIQTPIFLLLLALILKAAAECSKSCSPNHTPYDFPYPFGFSAGCAIRLDCNHDGAATIGEFPVQLINSDHIKVVIKAKCNRRLHTIRQFFSPHYAPTANNAILLQNCSSPISTCLLPTTMVQTKFESPDCSVNRTSISCYTQNNTASVAFLDFKNLTGTNCDYLLSSISAEALNSNTSAGISLEIQTVDLGWWLQGPCRQSCHKDANCTELISPSDGKLSHRCRCREGLVGDGYLTGTGCRKASNCHATKYTLAQCGTSTTATRTAVLVGTIVSGAFLLVTLLLFCCFIRRRSNLKSIHLNKITKRRLAEATTGAGVSTIHLYTYKEILKATHNFSEDYRLGTGAYASVYVGKLRGEWVAIKRLKNRDPDTIQQVLNEINLISSVSHPNLVRLLGCSMESGDQILVYEFMPNGTLFQHLQKQRGTGLPWLVRLNIAVETANAIAHLHSAINHPIFHRDIKSSNILLDHNLKSKVADFGLSRLGMAEISHISTAPQGTPGYLDPQYHQDFHLSDKSDVYSFGVVLVELITAMKVVDFCRPKDEVNLAGLAVDRIGNGQLREIVDPLMEMELDEWGSSSVEKVGEVAFRCLAFNRDVRPSMVEVAAELEEIRRSRWDEGGVKCKEIVESGSWKSSHGGGDYFSRGSVEDSWLSEQSSPCSSSLLNNIPL 702
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 967406 970025 + Cp4.1LG11g01590.1 Cpe11g00178 476972

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00178 702 ProSitePatterns Protein kinases ATP-binding region signature. 376 397 IPR017441 GO:0005524
Cpe11g00178 702 SMART serkin_6 370 650 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe11g00178 702 Gene3D Laminin 234 271 - -
Cpe11g00178 702 Pfam Protein kinase domain 372 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe11g00178 702 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 50 660 IPR045274 GO:0007166
Cpe11g00178 702 ProSitePatterns Serine/Threonine protein kinases active-site signature. 489 501 IPR008271 GO:0004672|GO:0006468
Cpe11g00178 702 SUPERFAMILY Protein kinase-like (PK-like) 352 642 IPR011009 -
Cpe11g00178 702 Gene3D Transferase(Phosphotransferase) domain 1 445 659 - -
Cpe11g00178 702 ProSiteProfiles Protein kinase domain profile. 370 644 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe11g00178 702 Gene3D Phosphorylase Kinase; domain 1 350 444 - -
Cpe11g00178 702 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 14 50 660 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00178 - - - csv:101218893 1108.2
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe07g00450 Cpe11g00178 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g00178 Cpe-Chr11:967406 Cpe13g01098 Cpe-Chr13:8857398 8.58E-89 dispersed
Cpe17g01059 Cpe-Chr17:8022159 Cpe11g00178 Cpe-Chr11:967406 5.72E-50 transposed
Cpe10g00403 Cpe-Chr10:2352376 Cpe11g00178 Cpe-Chr11:967406 1.71E-62 wgd
Cpe11g00178 Cpe-Chr11:967406 Cpe19g00591 Cpe-Chr19:4910489 7.19E-37 wgd
Cpe11g00178 Cpe-Chr11:967406 Cpe07g00450 Cpe-Chr7:2878155 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g862 . . . . . . . . Cmo05g00222 Cmo12g00445 . . . Car12g00472 . . Cpe07g00450 Bhi04g00293 . . . . . Lcy13g2018 Cla08g01525 . . . . . . Cone4ag1879 Cone7ag1788 Cone17ag1312 . . . . Cme03g01991 . Blo18g00827 . Bda01g01485 Bpe02g01680 . Bma01g00774 . . . . Cma12g00502 Cma05g00216 Car05g00176 . Cpe11g00178 . . . . . . . . . . . . . . . Lsi08g01427 Csa02g02013 Chy03g01496 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001068 3 4 2 2 3 2 4 2 2 2 2 2 4 2 1 4 2 6 4 2 2 2 1 2 1 2 2 2 2 1 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62701 PF00069 Pkinase 3.40E-40 CL0016 Cpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe11g00178 Cpe_Chr11 FPKM 29.164673 35.218624 10.158663 9.408771 10.707647 9.067184 10.32528 25.038122 24.853802 26.121071