Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00180 ATGGGTTGGCTAAGCAAAATTTTGAAAGTTGGATCTGGAGATAAAATAACTGGAAGGAATTACCAAACCGAGCTCGAGGAGGATCCAAATTCTCGTCTGCCCTCGACTTCGGAGGGATTATGGTCCGAAAACGAGAACGAAGACATCGATCGTGCAATAGCACTTTCTCTTGTAGAAGAGAGTCAGAAGGCAAATAATGTGATTGATCGTGATTATCAATTGGAAGAAGATGAACTGCTAGCCAAAGCAGTACAAGAAAGCCTCAACTTTGAGCCTCCTCCACAATATACAAGCGGAAATGCATATCAACCTTATCTACCTCAATATCAATTTGGTTCCAGGATATGTGCTGGCTGCTATAATGAGATTCGCTATGGACGTTACTTGAGCTGCCTGAATTCATTTTGGCATCCAGAATGTTTCCGTTGTCGTGCTTGCAACGTCCCGATATCAGACTATGAGTTTTCTACATCTGGGAATTTTCCTTATCATAAATCTTGCTACAAGGAGAGTTATCACCCAAAATGTGATGTTTGCAAGCACTTTATTCCAACAAATCCTACTGGTCTTATTGAATATAGGGCGCACCCTTTCTGGATACAGAAATACTGCCCGTCTCACGAATATGATGCCACTCCTCGATGTTGCAGTTGTGAACGAATGGAGCCACGAGACGTTAAGTATATTTCACTTCATGATGGTCGAAAGCTTTGCCTCGAGTGTCTCGACTCTACGATCATGGACACAAACGAATGTCAACCTCTGTATTGCGAGATACAAGCATTTTATGATAGTTTGAATATGAAAGTAGAGCAGGATGTTCCGTTGCTTTTGGTCGAAAGGCAAGCACTAAACGAAGCGAGAGAAGGCGAAAAACATGGTCATTATCATATCCCCGAGACAAGAGGACTGTGTCTTTCAGAGGAACAAACCATCAGCACTGTTCTTAGGCGGCCTAGATATGAAAGGGGAAATCGAGCAACGAGCACGATGTTGCTTACCGGGTCGATTTTAGCTCACGAGATGATGCACGCATGGCTACGTCTTAAAGGTTTTCGAACTCTAAGTCAAGACGTCGAAGAAGGTATCTGTCAAGTTCTAGCACACATGTGGCTGAGTGCCGAGCTCACGTCTAGCCAAGCTTACAACAATGTCGCGTCGACCTCGTACTCGGGTGCTGGAAAAAGAATGTCTAAATTTGAGAGAAAACTTGGGGAGTTGTTTAAACATCAGATAGAGTCAGACATGTCCCCAGTGTATGGAGATGGATTCAGGGCTGGGCAGATGGCTGTGAACAAATACGGTCTTCGGAGTACTCTGGATCATATTCAAATGACTGGAACCTTTCCTCATTGA 1356 43.81 MGWLSKILKVGSGDKITGRNYQTELEEDPNSRLPSTSEGLWSENENEDIDRAIALSLVEESQKANNVIDRDYQLEEDELLAKAVQESLNFEPPPQYTSGNAYQPYLPQYQFGSRICAGCYNEIRYGRYLSCLNSFWHPECFRCRACNVPISDYEFSTSGNFPYHKSCYKESYHPKCDVCKHFIPTNPTGLIEYRAHPFWIQKYCPSHEYDATPRCCSCERMEPRDVKYISLHDGRKLCLECLDSTIMDTNECQPLYCEIQAFYDSLNMKVEQDVPLLLVERQALNEAREGEKHGHYHIPETRGLCLSEEQTISTVLRRPRYERGNRATSTMLLTGSILAHEMMHAWLRLKGFRTLSQDVEEGICQVLAHMWLSAELTSSQAYNNVASTSYSGAGKRMSKFERKLGELFKHQIESDMSPVYGDGFRAGQMAVNKYGLRSTLDHIQMTGTFPH 451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 977738 981750 + Cp4.1LG11g01640.1 Cpe11g00180 476974

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00180 451 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 142 197 - -
Cpe11g00180 451 ProSiteProfiles LIM domain profile. 114 174 IPR001781 -
Cpe11g00180 451 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 109 141 - -
Cpe11g00180 451 SMART lim_4 115 167 IPR001781 -
Cpe11g00180 451 Gene3D Cysteine Rich Protein 110 187 - -
Cpe11g00180 451 Pfam Protein DA1 266 329 IPR022087 -
Cpe11g00180 451 Pfam Protein DA1 332 446 IPR022087 -
Cpe11g00180 451 Pfam LIM domain 116 170 IPR001781 -
Cpe11g00180 451 PANTHER PROTEIN DA1-RELATED 2 332 450 IPR045218 -
Cpe11g00180 451 PANTHER PROTEIN DA1-RELATED 2 1 329 IPR045218 -
Cpe11g00180 451 PANTHER PROTEIN DA1-LIKE 332 450 - -
Cpe11g00180 451 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 44 63 IPR003903 -
Cpe11g00180 451 PANTHER PROTEIN DA1-LIKE 1 329 - -
Cpe11g00180 451 CDD LIM_DA1 116 168 - -
Cpe11g00180 451 ProSitePatterns LIM zinc-binding domain signature. 116 150 IPR001781 -
Cpe11g00180 451 SMART uim 75 94 IPR003903 -
Cpe11g00180 451 SMART uim 44 63 IPR003903 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00180 - - - csv:101221261 848.58
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe07g00446 Cpe11g00180 CCT
Cpe07g00446 Cpe11g00180 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g00180 Cpe-Chr11:977738 Cpe16g00008 Cpe-Chr16:135240 0 dispersed
Cpe10g00393 Cpe-Chr10:2303083 Cpe11g00180 Cpe-Chr11:977738 2.23E-79 wgd
Cpe11g00180 Cpe-Chr11:977738 Cpe19g00578 Cpe-Chr19:4835622 5.72E-103 wgd
Cpe11g00180 Cpe-Chr11:977738 Cpe07g00446 Cpe-Chr7:2862267 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g879 . . . . . . . . Cmo05g00224 Cmo12g00443 . . . Car12g00468 . . Cpe07g00446 Bhi04g00285 . . . . . . Cla08g01521 Cam08g2012 Cec08g1588 Cco08g1723 Clacu08g1701 . Cre08g1483 Cone4ag1886 Cone7ag1797 Cone17ag1316 Cone20ag0158 . . . Cme03g01987 Blo17g00819 . Bda08g01302 . . Bpe05g00075 . Bma05g00105 . . . Cma12g00498 Cma05g00218 Car05g00178 . Cpe11g00180 . . . . . . . . . . . . . . . Lsi08g01424 Csa02g02018 Chy03g01493 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001147 2 4 2 2 2 2 2 2 2 2 2 2 4 2 2 3 2 6 3 2 2 2 2 2 2 3 2 9 2 3 79
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50205 PF12315 DA1-like 2.80E-47 CL0126 Cpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe11g00180 Cpe_Chr11 FPKM 11.455663 12.985754 28.1136 26.769501 13.774755 13.437236 15.069729 156.151993 160.21846 145.373596