Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe11g00182 | ATGGTACGGCCGCGAGAAGCTTCCAATTTCGAACGTATATTTTTTGGTTTCCGTCAAATGCGTTCGTCTTCGGTTTCAGATTTGTTCTTTGATCGATATCGGAACGCAGTTGGATTCCTTCCGTTGAATTTGATTCGCTTGGTCTCCGTTTGGGGACTTCTTCCTAGGATTCGAGATTATCTTGTAGGGTGTGCAGATATGGCGAGCGGGTTTGGGGAATCGACAAGTAGGCAACCCCAAGGCCCTTCTTATTCCGATAACAATGGTGATGCTAGTAATTTTGAATGCAATATTTGCCTGGATTTAGCTCAGGATCCTATTGTAACCCTATGCGGTCATCTTTTCTGTTGGCCATGCCTTTACAAGTGGCTGCACATTCATTCCCATCCCCAGGAATGTCCAGTTTGCAAGGCTCTCATAGAAGAACAAAAATTGGTTCCCTTATATGGTAGGGGAAAGACATCGACCGACCCGAGATCGAAAAGTATTCCTGGAATCAATATTCCTAATCGTCCTGCTGGACAGAGACCTGAAGCAGCAGGCCCTCCCCCAGAACCGAATCCTTTTCCCCACAATGGGTTTGGATTCATGGGAGGTCTTGGCGGGTTTGCCCCAATGGCATCGACGAGGTTTGGCAATTTCACTTTGTCTGCGGCTTTTGGTGGTCTTGTCCCATCTTTATTCAACTTTCAGATGCATGGATATGCAGATCCAAGCATGTATGGTGCAGGTGCTAACGTTCCATATGGTTTTCCTAACATGTTTCATGGTAGCCATGGTCACGCCCATGGCTACTATCACCATCTCCGTCAAGGTCAGCAAGATTATTACCTGAAGCGGCTGCTTTTGTTTATTGGTTTCTGTGTTCTTCTTGCCCTAATCTGGCAATAG | 891 | 46.35 | MVRPREASNFERIFFGFRQMRSSSVSDLFFDRYRNAVGFLPLNLIRLVSVWGLLPRIRDYLVGCADMASGFGESTSRQPQGPSYSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHIHSHPQECPVCKALIEEQKLVPLYGRGKTSTDPRSKSIPGINIPNRPAGQRPEAAGPPPEPNPFPHNGFGFMGGLGGFAPMASTRFGNFTLSAAFGGLVPSLFNFQMHGYADPSMYGAGANVPYGFPNMFHGSHGHAHGYYHHLRQGQQDYYLKRLLLFIGFCVLLALIWQ | 296 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 984557 | 987421 | - | Cp4.1LG11g01720.1 | Cpe11g00182 | 476976 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe11g00182 | 296 | ProSiteProfiles | Zinc finger RING-type profile. | 96 | 137 | IPR001841 | - | |
Cpe11g00182 | 296 | PANTHER | OS12G0636000 PROTEIN | 68 | 296 | - | - | |
Cpe11g00182 | 296 | MobiDBLite | consensus disorder prediction | 150 | 188 | - | - | |
Cpe11g00182 | 296 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 72 | 162 | IPR013083 | - | |
Cpe11g00182 | 296 | ProSitePatterns | Zinc finger RING-type signature. | 111 | 120 | IPR017907 | - | |
Cpe11g00182 | 296 | CDD | RING-HC_AtRMA_like | 94 | 138 | - | - | |
Cpe11g00182 | 296 | SUPERFAMILY | RING/U-box | 92 | 149 | - | - | |
Cpe11g00182 | 296 | SMART | ring_2 | 96 | 136 | IPR001841 | - | |
Cpe11g00182 | 296 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 68 | 296 | IPR045103 | GO:0005783|GO:0006511|GO:0061630 | |
Cpe11g00182 | 296 | Pfam | Zinc finger, C3HC4 type (RING finger) | 95 | 136 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe02g00287 | Cpe-Chr2:1483265 | Cpe11g00182 | Cpe-Chr11:984557 | 2.15E-10 | dispersed | |
Cpe11g00182 | Cpe-Chr11:984557 | Cpe07g00444 | Cpe-Chr7:2853315 | 8.86E-112 | dispersed | |
Cpe16g00783 | Cpe-Chr16:7729404 | Cpe11g00182 | Cpe-Chr11:984557 | 3.77E-27 | dispersed | |
Cpe10g00390 | Cpe-Chr10:2290159 | Cpe11g00182 | Cpe-Chr11:984557 | 1.60E-78 | wgd | |
Cpe11g00182 | Cpe-Chr11:984557 | Cpe19g00574 | Cpe-Chr19:4819902 | 1.44E-81 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe11g00182 | K10666 | - | csv:101221027 | 412.535 |