Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00182 ATGGTACGGCCGCGAGAAGCTTCCAATTTCGAACGTATATTTTTTGGTTTCCGTCAAATGCGTTCGTCTTCGGTTTCAGATTTGTTCTTTGATCGATATCGGAACGCAGTTGGATTCCTTCCGTTGAATTTGATTCGCTTGGTCTCCGTTTGGGGACTTCTTCCTAGGATTCGAGATTATCTTGTAGGGTGTGCAGATATGGCGAGCGGGTTTGGGGAATCGACAAGTAGGCAACCCCAAGGCCCTTCTTATTCCGATAACAATGGTGATGCTAGTAATTTTGAATGCAATATTTGCCTGGATTTAGCTCAGGATCCTATTGTAACCCTATGCGGTCATCTTTTCTGTTGGCCATGCCTTTACAAGTGGCTGCACATTCATTCCCATCCCCAGGAATGTCCAGTTTGCAAGGCTCTCATAGAAGAACAAAAATTGGTTCCCTTATATGGTAGGGGAAAGACATCGACCGACCCGAGATCGAAAAGTATTCCTGGAATCAATATTCCTAATCGTCCTGCTGGACAGAGACCTGAAGCAGCAGGCCCTCCCCCAGAACCGAATCCTTTTCCCCACAATGGGTTTGGATTCATGGGAGGTCTTGGCGGGTTTGCCCCAATGGCATCGACGAGGTTTGGCAATTTCACTTTGTCTGCGGCTTTTGGTGGTCTTGTCCCATCTTTATTCAACTTTCAGATGCATGGATATGCAGATCCAAGCATGTATGGTGCAGGTGCTAACGTTCCATATGGTTTTCCTAACATGTTTCATGGTAGCCATGGTCACGCCCATGGCTACTATCACCATCTCCGTCAAGGTCAGCAAGATTATTACCTGAAGCGGCTGCTTTTGTTTATTGGTTTCTGTGTTCTTCTTGCCCTAATCTGGCAATAG 891 46.35 MVRPREASNFERIFFGFRQMRSSSVSDLFFDRYRNAVGFLPLNLIRLVSVWGLLPRIRDYLVGCADMASGFGESTSRQPQGPSYSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHIHSHPQECPVCKALIEEQKLVPLYGRGKTSTDPRSKSIPGINIPNRPAGQRPEAAGPPPEPNPFPHNGFGFMGGLGGFAPMASTRFGNFTLSAAFGGLVPSLFNFQMHGYADPSMYGAGANVPYGFPNMFHGSHGHAHGYYHHLRQGQQDYYLKRLLLFIGFCVLLALIWQ 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 984557 987421 - Cp4.1LG11g01720.1 Cpe11g00182 476976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00182 296 ProSiteProfiles Zinc finger RING-type profile. 96 137 IPR001841 -
Cpe11g00182 296 PANTHER OS12G0636000 PROTEIN 68 296 - -
Cpe11g00182 296 MobiDBLite consensus disorder prediction 150 188 - -
Cpe11g00182 296 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 162 IPR013083 -
Cpe11g00182 296 ProSitePatterns Zinc finger RING-type signature. 111 120 IPR017907 -
Cpe11g00182 296 CDD RING-HC_AtRMA_like 94 138 - -
Cpe11g00182 296 SUPERFAMILY RING/U-box 92 149 - -
Cpe11g00182 296 SMART ring_2 96 136 IPR001841 -
Cpe11g00182 296 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 68 296 IPR045103 GO:0005783|GO:0006511|GO:0061630
Cpe11g00182 296 Pfam Zinc finger, C3HC4 type (RING finger) 95 136 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00287 Cpe-Chr2:1483265 Cpe11g00182 Cpe-Chr11:984557 2.15E-10 dispersed
Cpe11g00182 Cpe-Chr11:984557 Cpe07g00444 Cpe-Chr7:2853315 8.86E-112 dispersed
Cpe16g00783 Cpe-Chr16:7729404 Cpe11g00182 Cpe-Chr11:984557 3.77E-27 dispersed
Cpe10g00390 Cpe-Chr10:2290159 Cpe11g00182 Cpe-Chr11:984557 1.60E-78 wgd
Cpe11g00182 Cpe-Chr11:984557 Cpe19g00574 Cpe-Chr19:4819902 1.44E-81 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00182 K10666 - csv:101221027 412.535