Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00182 ATGGTACGGCCGCGAGAAGCTTCCAATTTCGAACGTATATTTTTTGGTTTCCGTCAAATGCGTTCGTCTTCGGTTTCAGATTTGTTCTTTGATCGATATCGGAACGCAGTTGGATTCCTTCCGTTGAATTTGATTCGCTTGGTCTCCGTTTGGGGACTTCTTCCTAGGATTCGAGATTATCTTGTAGGGTGTGCAGATATGGCGAGCGGGTTTGGGGAATCGACAAGTAGGCAACCCCAAGGCCCTTCTTATTCCGATAACAATGGTGATGCTAGTAATTTTGAATGCAATATTTGCCTGGATTTAGCTCAGGATCCTATTGTAACCCTATGCGGTCATCTTTTCTGTTGGCCATGCCTTTACAAGTGGCTGCACATTCATTCCCATCCCCAGGAATGTCCAGTTTGCAAGGCTCTCATAGAAGAACAAAAATTGGTTCCCTTATATGGTAGGGGAAAGACATCGACCGACCCGAGATCGAAAAGTATTCCTGGAATCAATATTCCTAATCGTCCTGCTGGACAGAGACCTGAAGCAGCAGGCCCTCCCCCAGAACCGAATCCTTTTCCCCACAATGGGTTTGGATTCATGGGAGGTCTTGGCGGGTTTGCCCCAATGGCATCGACGAGGTTTGGCAATTTCACTTTGTCTGCGGCTTTTGGTGGTCTTGTCCCATCTTTATTCAACTTTCAGATGCATGGATATGCAGATCCAAGCATGTATGGTGCAGGTGCTAACGTTCCATATGGTTTTCCTAACATGTTTCATGGTAGCCATGGTCACGCCCATGGCTACTATCACCATCTCCGTCAAGGTCAGCAAGATTATTACCTGAAGCGGCTGCTTTTGTTTATTGGTTTCTGTGTTCTTCTTGCCCTAATCTGGCAATAG 891 46.35 MVRPREASNFERIFFGFRQMRSSSVSDLFFDRYRNAVGFLPLNLIRLVSVWGLLPRIRDYLVGCADMASGFGESTSRQPQGPSYSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHIHSHPQECPVCKALIEEQKLVPLYGRGKTSTDPRSKSIPGINIPNRPAGQRPEAAGPPPEPNPFPHNGFGFMGGLGGFAPMASTRFGNFTLSAAFGGLVPSLFNFQMHGYADPSMYGAGANVPYGFPNMFHGSHGHAHGYYHHLRQGQQDYYLKRLLLFIGFCVLLALIWQ 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 984557 987421 - Cp4.1LG11g01720.1 Cpe11g00182 476976

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00182 296 ProSiteProfiles Zinc finger RING-type profile. 96 137 IPR001841 -
Cpe11g00182 296 PANTHER OS12G0636000 PROTEIN 68 296 - -
Cpe11g00182 296 MobiDBLite consensus disorder prediction 150 188 - -
Cpe11g00182 296 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 162 IPR013083 -
Cpe11g00182 296 ProSitePatterns Zinc finger RING-type signature. 111 120 IPR017907 -
Cpe11g00182 296 CDD RING-HC_AtRMA_like 94 138 - -
Cpe11g00182 296 SUPERFAMILY RING/U-box 92 149 - -
Cpe11g00182 296 SMART ring_2 96 136 IPR001841 -
Cpe11g00182 296 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 68 296 IPR045103 GO:0005783|GO:0006511|GO:0061630
Cpe11g00182 296 Pfam Zinc finger, C3HC4 type (RING finger) 95 136 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00182 K10666 RNF5; E3 ubiquitin-protein ligase RNF5 [EC:2.3.2.27] - csv:101221027 412.535
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00287 Cpe-Chr2:1483265 Cpe11g00182 Cpe-Chr11:984557 2.15E-10 dispersed
Cpe11g00182 Cpe-Chr11:984557 Cpe07g00444 Cpe-Chr7:2853315 8.86E-112 dispersed
Cpe16g00783 Cpe-Chr16:7729404 Cpe11g00182 Cpe-Chr11:984557 3.77E-27 dispersed
Cpe10g00390 Cpe-Chr10:2290159 Cpe11g00182 Cpe-Chr11:984557 1.60E-78 wgd
Cpe11g00182 Cpe-Chr11:984557 Cpe19g00574 Cpe-Chr19:4819902 1.44E-81 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g886 . . Bda01g00547 . Bpe02g00406 . Bma04g00198 Bma01g02302 Cmo05g00227 . . . . . Sed11g1002 . . Bhi04g00282 Tan02g1923 Cmetu03g0100 . Hepe10g0677 . Lcy13g2012 Cla08g01518 Cam08g2009 Cec08g1585 Cco08g1720 Clacu08g1698 . Cre08g1481 Cone4ag1888 Cone7ag1799 Cone17ag1319 Cone20ag0156 . . . Cme03g01984 . . . . . . . . . . . . Cma05g00220 Car05g00180 . Cpe11g00182 . . . . . . . . . . . . . . . Lsi08g01421 Csa02g02021 Chy03g01490 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe07g00830 . 84 593 C3H Transcription Factor Family AT2G31510 72.8 2.3e-226 781.9
Cpe17g01099 CST 72 599 C3H Transcription Factor Family AT2G31510 69.9 2.2e-221 765.4
Cpe12g00507 CST 133 570 C3H Transcription Factor Family AT2G31510 62.7 2.2e-168 589.3
Cpe17g01099 CST 55 569 C3H Transcription Factor Family AT2G31770 55.3 4.5e-167 585.1
Cpe07g00830 . 53 552 C3H Transcription Factor Family AT2G31770 55.5 6.5e-166 581.3
Cpe07g00830 . 67 552 C3H Transcription Factor Family AT2G31760 56.4 1.5e-164 576.6
Cpe17g01099 CST 55 563 C3H Transcription Factor Family AT2G31760 54.1 6.4e-163 571.2
Cpe05g00173 CCT 19 159 C3H Transcription Factor Family AT3G03550 53.9 2.2e-37 153.7
Cpe19g00504 . 8 172 C3H Transcription Factor Family AT5G06490 51.9 2.1e-45 179.5
Cpe10g00317 . 8 169 C3H Transcription Factor Family AT5G06490 50.8 7.9e-45 177.6
Cpe19g00504 . 8 172 C3H Transcription Factor Family AT5G06490 51.9 2.1e-45 179.5
Cpe10g00317 . 8 169 C3H Transcription Factor Family AT5G06490 50.8 7.9e-45 177.6
Cpe13g00990 CCT,ECH 73 298 C3H Transcription Factor Family AT3G02290 60.3 2.1e-73 272.7
Cpe01g02439 CCT,ECH 1 219 C3H Transcription Factor Family AT3G02290 60.4 1.2e-71 266.9
Cpe18g00464 . 427 713 C3H Transcription Factor Family AT1G11020 77.4 2.4e-131 465.7
Cpe04g01175 . 1 347 C3H Transcription Factor Family AT1G11020 66.8 1.0e-129 460.3
Cpe03g01002 . 59 218 C3H Transcription Factor Family AT1G50440 75.6 2.7e-68 255.8
Cpe02g01767 . 52 211 C3H Transcription Factor Family AT1G50440 73.8 1.5e-66 250.0
Cpe19g00111 . 1 314 C3H Transcription Factor Family AT5G08750 61.2 7.6e-102 367.9
Cpe10g01253 . 8 330 C3H Transcription Factor Family AT5G08750 58.3 1.2e-99 360.5
Cpe01g00346 . 1 532 C3H Transcription Factor Family AT3G16090 63.8 2.7e-174 609.0
Cpe14g00220 . 7 532 C3H Transcription Factor Family AT3G16090 64.2 9.5e-172 600.5
Cpe13g00990 CCT,ECH 73 297 C3H Transcription Factor Family AT5G38895 57.5 4.0e-73 272.3
Cpe01g02439 CCT,ECH 1 219 C3H Transcription Factor Family AT5G38895 55.5 1.7e-68 256.9
Cpe11g00182 . 87 293 C3H Transcription Factor Family AT1G19310 67.3 1.3e-78 290.0
Cpe07g00444 CCT,CST,ECH 16 193 C3H Transcription Factor Family AT1G19310 71.4 4.6e-73 271.6
Cpe10g00390 . 16 225 C3H Transcription Factor Family AT1G19310 59.4 5.3e-69 258.1
Cpe19g00574 . 19 221 C3H Transcription Factor Family AT1G19310 59.2 3.2e-66 248.8
Cpe02g01348 . 9 188 C3H Transcription Factor Family AT1G26800 51.3 7.4e-46 181.0
Cpe10g00582 . 9 323 C3H Transcription Factor Family AT2G22120 83.6 1.8e-159 559.3
Cpe11g00408 . 67 174 C3H Transcription Factor Family AT5G07040 65.7 1.2e-38 156.8
Cpe04g01416 CCT,ECH 1 389 C3H Transcription Factor Family AT1G18470 76.1 4.4e-178 621.3
Cpe18g00744 CCT,ECH 1 407 C3H Transcription Factor Family AT1G18470 73.2 2.7e-175 612.1
Cpe01g01761 CCT,ECH 11 372 C3H Transcription Factor Family AT1G18470 60.5 1.7e-129 459.9
Cpe13g00388 . 82 300 C3H Transcription Factor Family AT1G68200 51.7 2.6e-50 196.4
Cpe17g01099 CST 55 569 C3H Transcription Factor Family AT2G31770 55.3 4.5e-167 585.1
Cpe07g00830 . 53 552 C3H Transcription Factor Family AT2G31770 55.5 6.5e-166 581.3
Cpe07g00830 . 67 552 C3H Transcription Factor Family AT2G31760 56.4 1.5e-164 576.6
Cpe17g01099 CST 55 563 C3H Transcription Factor Family AT2G31760 54.1 6.4e-163 571.2
Cpe06g00833 CST 72 299 C3H Transcription Factor Family AT5G55970 69.4 5.1e-94 341.7
Cpe06g00832 . 39 298 C3H Transcription Factor Family AT5G55970 63.1 2.4e-91 332.8
Cpe02g00834 CST 20 276 C3H Transcription Factor Family AT5G55970 61.2 4.1e-91 332.0
Cpe10g01253 . 8 330 C3H Transcription Factor Family AT5G63780 56.5 5.3e-95 345.1
Cpe19g00111 . 1 314 C3H Transcription Factor Family AT5G63780 54.7 5.0e-93 338.6
Cpe03g00364 . 1 425 C3H Transcription Factor Family AT3G58030 53.3 9.1e-102 367.9
Cpe06g00833 CST 65 363 C3H Transcription Factor Family AT4G26580 62.7 7.5e-112 401.0
Cpe02g00834 CST 35 343 C3H Transcription Factor Family AT4G26580 61.1 4.9e-111 398.3
Cpe06g00832 . 41 377 C3H Transcription Factor Family AT4G26580 55.8 8.9e-105 377.5
Cpe19g00170 . 28 494 C3H Transcription Factor Family AT5G01960 68.5 4.8e-172 601.3
Cpe01g00078 . 1 487 C3H Transcription Factor Family AT5G01960 55.5 3.2e-144 508.8
Cpe10g01018 . 10 334 C3H Transcription Factor Family AT5G01960 75.4 4.8e-140 495.0
Cpe01g00957 . 43 501 C3H Transcription Factor Family AT5G01960 57.2 3.5e-138 488.8
Cpe05g01385 . 1 151 C3H Transcription Factor Family AT2G04240 58.0 4.7e-43 171.4
Cpe16g00361 . 68 221 C3H Transcription Factor Family AT2G04240 58.5 6.1e-43 171.0
Cpe15g00675 CST 1 149 C3H Transcription Factor Family AT2G04240 59.1 2.0e-38 156.0
Cpe05g00476 CCT 15 243 C3H Transcription Factor Family AT5G19430 55.8 1.2e-64 243.8
Cpe16g00858 CCT 15 238 C3H Transcription Factor Family AT5G19430 55.4 2.2e-63 239.6
Cpe01g00536 CCT 138 585 C3H Transcription Factor Family AT5G45290 50.3 8.2e-100 361.7
Cpe14g00432 CCT 139 576 C3H Transcription Factor Family AT5G45290 51.7 3.6e-95 346.3
Cpe16g00858 CCT 17 238 C3H Transcription Factor Family AT5G12310 53.3 8.1e-58 221.1
Cpe05g00476 CCT 17 243 C3H Transcription Factor Family AT5G12310 53.9 6.8e-57 218.0
Cpe04g01345 . 76 373 C3H Transcription Factor Family AT5G05810 51.7 2.2e-73 273.5
Cpe01g02534 CCT,ECH 72 235 C3H Transcription Factor Family AT5G05830 64.6 1.1e-57 220.3
Cpe08g01193 CCT,ECH 71 232 C3H Transcription Factor Family AT5G05830 63.6 9.4e-57 217.2
Cpe03g00081 CCT,CST,ECH 70 231 C3H Transcription Factor Family AT5G05830 59.9 3.3e-54 208.8
Cpe19g00305 CCT,CST,ECH 33 163 C3H Transcription Factor Family AT5G05830 61.8 4.2e-41 165.2
Cpe13g01080 CCT,ECH 53 158 C3H Transcription Factor Family AT5G05830 68.9 1.5e-38 156.8
Cpe13g00990 CCT,ECH 73 298 C3H Transcription Factor Family AT5G15790 59.7 5.3e-72 268.1
Cpe01g02439 CCT,ECH 1 219 C3H Transcription Factor Family AT5G15790 59.7 4.4e-71 265.0
Cpe13g01106 CCT,ECH 1 272 C3H Transcription Factor Family AT3G55530 81.0 1.2e-115 413.3
Cpe01g02556 CCT,ECH 1 257 C3H Transcription Factor Family AT3G55530 74.4 4.9e-101 364.8
Cpe17g00838 . 1 275 C3H Transcription Factor Family AT1G63900 72.8 1.1e-113 406.8
Cpe11g00182 . 91 216 C3H Transcription Factor Family AT1G74990 60.6 6.3e-41 164.1
Cpe07g00444 CCT,CST,ECH 25 150 C3H Transcription Factor Family AT1G74990 60.6 8.3e-41 163.7
Cpe19g00574 . 10 145 C3H Transcription Factor Family AT1G74990 52.1 5.5e-37 151.0
Cpe02g00305 . 3 302 C3H Transcription Factor Family AT5G20910 62.8 5.3e-104 374.8
Cpe14g00220 . 125 525 C3H Transcription Factor Family AT1G65040 56.3 2.2e-113 406.0
Cpe01g00346 . 119 531 C3H Transcription Factor Family AT1G65040 55.4 1.0e-110 397.1
Cpe10g00390 . 17 227 C3H Transcription Factor Family AT2G23780 62.1 8.5e-75 277.3
Cpe19g00574 . 8 223 C3H Transcription Factor Family AT2G23780 57.4 2.8e-70 262.3
Cpe11g00182 . 72 295 C3H Transcription Factor Family AT2G23780 56.5 4.5e-68 255.0
Cpe07g00444 CCT,CST,ECH 6 191 C3H Transcription Factor Family AT2G23780 61.6 5.7e-63 238.0
Cpe03g00446 CCT,CST 1 317 C3H Transcription Factor Family AT3G10810 52.4 1.0e-77 288.1
Cpe13g00142 . 1 170 C3H Transcription Factor Family AT1G63840 57.2 7.9e-46 180.6
Cpe17g00369 . 1 152 C3H Transcription Factor Family AT1G63840 51.3 1.7e-40 162.9
Cpe13g00346 CCT 34 345 C3H Transcription Factor Family AT1G68070 67.2 1.4e-116 416.8
Cpe01g01827 CCT 8 336 C3H Transcription Factor Family AT1G68070 64.3 6.9e-113 404.4
Cpe14g00834 CCT 47 376 C3H Transcription Factor Family AT1G68070 50.6 7.2e-86 314.7
Cpe02g00022 . 4 174 C3H Transcription Factor Family AT1G76410 59.0 1.3e-52 203.4
Cpe06g00008 . 4 178 C3H Transcription Factor Family AT1G76410 56.5 2.2e-52 202.6
Cpe08g01279 . 30 169 C3H Transcription Factor Family AT1G76410 60.0 9.1e-43 170.6
Cpe11g00569 . 1 410 C3H Transcription Factor Family AT1G80400 53.3 1.2e-111 400.6
Cpe07g00261 . 1 411 C3H Transcription Factor Family AT1G80400 51.8 1.9e-109 393.3
Cpe08g01279 . 25 160 C3H Transcription Factor Family AT2G17450 60.7 5.5e-40 161.4
Cpe07g00830 . 84 593 C3H Transcription Factor Family AT2G31510 72.8 2.3e-226 781.9
Cpe17g01099 CST 72 599 C3H Transcription Factor Family AT2G31510 69.9 2.2e-221 765.4
Cpe12g00507 CST 133 570 C3H Transcription Factor Family AT2G31510 62.7 2.2e-168 589.3
Cpe10g00317 . 7 168 C3H Transcription Factor Family AT2G35910 64.2 1.8e-53 206.5
Cpe19g00504 . 7 171 C3H Transcription Factor Family AT2G35910 55.6 1.9e-47 186.4
Cpe03g00321 . 1 163 C3H Transcription Factor Family AT2G35910 52.7 2.8e-43 172.6
Cpe10g01153 . 3 309 C3H Transcription Factor Family AT2G41980 81.4 1.2e-151 533.1
Cpe19g00084 . 1 306 C3H Transcription Factor Family AT2G41980 80.5 1.4e-149 526.2
Cpe14g00039 . 61 318 C3H Transcription Factor Family AT2G41980 81.0 3.6e-129 458.4
Cpe09g00015 . 1152 1409 C3H Transcription Factor Family AT2G41980 81.4 4.7e-129 458.0
Cpe09g00442 . 42 316 C3H Transcription Factor Family AT2G41980 75.8 9.8e-127 450.3
Cpe01g01211 . 112 369 C3H Transcription Factor Family AT2G41980 79.5 4.9e-126 448.0
Cpe13g00488 . 48 305 C3H Transcription Factor Family AT2G41980 78.7 3.2e-125 445.3
Cpe01g01921 . 48 305 C3H Transcription Factor Family AT2G41980 77.5 5.0e-123 438.0
Cpe12g00474 . 43 301 C3H Transcription Factor Family AT2G41980 75.7 5.0e-123 438.0
Cpe17g01016 . 44 302 C3H Transcription Factor Family AT2G41980 73.7 3.1e-120 428.7
Cpe08g00242 CST 107 381 C3H Transcription Factor Family AT3G06140 60.3 5.4e-92 335.1
Cpe03g01415 CST 118 375 C3H Transcription Factor Family AT3G06140 55.4 1.2e-78 290.8
Cpe03g00177 CCT,ECH 34 331 C3H Transcription Factor Family AT3G09770 59.4 5.0e-87 318.5
Cpe08g01101 CCT,ECH 33 329 C3H Transcription Factor Family AT3G09770 58.7 3.6e-85 312.4
Cpe04g00449 . 132 698 C3H Transcription Factor Family AT3G26730 54.3 4.1e-163 572.4
Cpe18g00841 CCT,CST 1 294 C3H Transcription Factor Family AT3G47990 71.4 4.1e-125 444.9
Cpe20g00235 CCT 58 341 C3H Transcription Factor Family AT3G47990 66.2 2.7e-113 405.6
Cpe09g01032 CCT,CST 58 291 C3H Transcription Factor Family AT3G47990 77.8 3.6e-113 405.2
Cpe11g00454 . 27 130 C3H Transcription Factor Family AT1G72220 68.2 7.5e-37 152.1
Cpe02g00022 . 4 186 C3H Transcription Factor Family AT1G20823 58.3 4.2e-54 208.4
Cpe06g00008 . 4 186 C3H Transcription Factor Family AT1G20823 57.8 4.6e-53 204.9
Cpe08g01279 . 28 169 C3H Transcription Factor Family AT1G20823 63.2 3.6e-45 178.7
Cpe16g00220 . 42 414 C3H Transcription Factor Family AT3G18930 54.3 9.6e-85 311.2
Cpe14g01041 . 20 235 C3H Transcription Factor Family AT5G66070 73.6 1.7e-75 279.6
Cpe08g01305 . 59 274 C3H Transcription Factor Family AT5G66070 73.1 3.1e-74 275.4
Cpe08g01137 . 1 262 C3H Transcription Factor Family AT5G02750 53.5 3.1e-66 249.2
Cpe18g00744 CCT,ECH 5 485 C3H Transcription Factor Family AT1G73950 70.3 7.6e-197 683.7
Cpe04g01416 CCT,ECH 5 467 C3H Transcription Factor Family AT1G73950 71.1 4.4e-189 657.9
Cpe01g01761 CCT,ECH 12 450 C3H Transcription Factor Family AT1G73950 57.1 1.2e-146 516.9
Cpe06g00948 CCT 3 143 C3H Transcription Factor Family AT1G33480 58.9 4.0e-44 175.6
Cpe02g00984 CCT 21 155 C3H Transcription Factor Family AT1G33480 55.6 3.3e-38 156.0
Cpe01g01827 CCT 2 244 C3H Transcription Factor Family AT2G01735 58.5 3.6e-74 275.4
Cpe13g00346 CCT 3 243 C3H Transcription Factor Family AT2G01735 59.7 4.7e-74 275.0
Cpe14g00834 CCT 60 269 C3H Transcription Factor Family AT2G01735 54.2 1.7e-52 203.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001146 5 2 2 4 3 2 4 2 2 2 2 2 4 2 2 4 2 6 4 2 2 2 2 2 2 2 2 3 2 2 79
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe11g00182 Cpe_Chr11 FPKM 3.573731 3.830186 2.60406 2.558315 6.802227 5.839791 6.742674 1.282515 1.015319 1.168182