Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00193 ATGGCCGGCCGCTTCGACTTTGGCTCTCGCCCCAATCTCTCTGTCTCCAGTCCGCTCCATGCTGCCAATGATGTTCAGGGGTCTGAAAATCCAATTCCTCTTTCACCACAGTGGCTTCTGCCTAAACCAGGGGAGAGTAAGCATGGAATGGGAACTGGGGAAAACCATTTCAGTCATCAACCTGTTTATGGAAACCGCATGGACACGATGAAGGGATCAGAGAATTCTGAGGATATGAATGAAATACAAAAGAAAAAGGAAATTTTTAGGCCATCCTTGACTGATTCTGAAATTGGTAGGCGTGACCGTTGGCATGACGAGGAAAGAGAAAATAGTTCTTCAGTGCGTAAGGATCGTTGGAGGGATGGTGAGAAAGAGATAGGTGATGGTCGTAAGATGGATCGTTGGAATGAAGACTCATCCACAAGAGTCTTTAGAGAATCTCGCCGAGGCCCATCGGAACGCTGGTCTGATTCAAGCAATCGGGATAATGTTCATTATGATCAACGACGTGAGAGCAAATGGAACACACGTTGGGGCCCTGATGATAAGGAAACTGAAGGCTTTCGTGAGAAGCGGGTGGACTCTGGAAGAGATGGTGATTTGCACCTTGACAAAAATTTCTCTCATGTGTCCAATTATGGGAAAAATGACAGGGATGGAGATCATTATCGCCCATGGAGGTCTAGTTCCTCTCAGGGTCGAGGTAAGGGAGAACCCCCTCATCACCAAACCCAAACTCCAATCAAACAAGTTCCTGCATTTTCCCATCGTGGACGTGCAGACAACACACCTCCTACCTTCTCTTTAGGTCGTGGAATCATCAGTTCTGGTGTAAATCCTCCCAATAGTATTTATTCATCTCCACATTCACTCGGAGCTTCCTCTGAGAAATCTGGAAGAGAGCCTTACTACTACAAATATAGCAGGACAAAGTTGCTTGATGTTTTCAGGACTACCAGTCTGACATCACAGCAAACTTTAAAAGATGGATTTGTGCCCGTGCCTACTCTTACACTGGATGAACCGTTGGAGCCTCTTGCTCTTTGTGTGCCAACTACTGAAGAAATGACTTTCTTGAAGGGGATTGATAAAGGGGAAATTGTCAGTAGTGGTGCACCTCAGGTGTCAAAGGATGGTCGAAACTCATCAGAATTTATGCAGACTAGACGAACAAAACTTGGTGTTTCACCTTCCCTAGGCAGTAGAGAGGATTTACCTCATGGCTTTGATGATTGCAATGATGATAAGGATGATAGCACCACTAAACCTGGTCACACAAACTATTCAGAGGTCACTACCGAGAGGCAGTTGCCATATCATAGGCCCCTGGCACATGCTAGTAGCACCTTCAAATCTGAAGCTTTCAGAGAAGATGACAATGCTATGAGAAAAGCAGATGAGGGGCCTGTCAGTAGGGAATCTAGTGTTAAGGGGGGTACCAATGTTCAACACGGCCGTACATGGGATGCCTCATCACTTGAGCAACTCCTGAATACATCCTTACCTGATTGGAGAGACAATCCTAATAATATCAACTCAGGAACTCCTGACAAGGGTCTACAGTCTTCAAAGAATCTTAATGATGGGTGGGGAAGTAACTCAGCCACTCCATCTTATCCGAAGGAGAATCCCAAATGGCATACCGGGGATGAATCCATCCTTAGAAGGCAGCTTTCAGGGATTTTGGACAAGGAACAACTAGCAAGGAAAACTGTTCAATCTGCTCCAGAGGATTTGCAATTCCATTACATTGATCCTTCTGGTGCAATTCAGGGCCCATTTAGTGGGGCTGACATTATTCAATGGTTTGAGGGTGGGTATTTTGGCTTAGATTTACCTGTCCGTCTGGCAAATGCACCAAATGACTTGCCATTTTCAGCACTTGGTGATGCCATGCCTCATTTACGATCTAAAGCCAAGCCACCACCAGGATTTTGTGGACCAAAGCAGAATGAATTCGCAGATACATTAGGTAACGCTAGTATTGGTAGCTTGGGAAAGCTTCATACTGGTTTGAATGAGATTGATCCTTTGAGGAATGAGACAAGGCATAAACATGGCTCAACGGTTGAAGCTGAAAACAGATTTCTGGAGTCACTTATGTCTGGTAATATAGGTTCTTCACCTCTCGAGAAGAGTGCCTTTTCTGAAGGCTTGCCGGGATATTTTGGAAATAATTCTAATAATTTGCCTTCGTTGGGAATAGACAATGGAAACAACCTTTTCCTGTTGGCCAAAAGAATGGAACTTGAGCGGCAAAGGTCTTTGTCCAATCCTTATGCATTTTGGCCTGGTATAGATGCTTCATCCAAGGTATCTAAGCCAGATATTGGCCTAGATGATCCAATTCAGCAAGCCAAACTTTTATCTTCAATAATAGACCATTCTCGCCAAACTTCTCATCCTCAAAGTGCTGATATGTCGGCCATTCTGCAAGGCTTGTCTGACAAAGCACCTCCTGGCATTAATGACGTTGCTGGCTGGTCAAAATTTGCTTCACAGTGTGCTCCCGATCCTCTCCAAAGTAAACTTGACTTGCACCATGATCTTAACTTGTCTTCGCAGGCACCTTTTGGTTTCCAACAACAGAGATTACAACCACAGCCGCCGTTGACAAATTTGCTTGCTCAAGCTACTGATAATTCTACCTTAACTCCAGATAAGTTTCTTCCTTCCAGCTTATCTCAAGATCCACAACTGATAATCCAGCTATCACGAGAGAAGTTTCAGATTGGTTCACAAAAGCCCTTAAATGTACTAACTGATCATGCGACTACCTACGGAAATATTGCTCTGCAAGCTACCCAAGGAGCCAGTTACAATGTTAATTCAGAAGATCCGTCCCTTATTCTTCCACCTCAAATGTTTGGAAATGTTGTTCAGCAGCAGAAGAGTTGGACTACTGCTATCCCCGAGCAGCTTAATGATACTCGTCCGAAAGATGTTATACCTGGATCTAATGTTGTCGAGGGCTCACTTTTGCCTGGGATGTCTAGTAAATCAAACGAGGATGTGAATCTTGTACCGAAGTCATCTGATAGCCACACTATTATTAAAACTTCGGAAAAAATATCGGAGGATGTACCAAGGCTGGATGCAACTGTCACATCTTTTGCATCTGTTGATGCTACTGTGGAACCTCTTCCTCTCAAGAACGCTGAAATCTCAGTTGCTATACCACCACCAGCAGTTCATAATATTGAAATTTCCGTTCCCGACAGTGTACCTGCTGTGAAGGTTCAAGAAGCTAGTATGCCTATGGAAAAGCTGGCAAGGGATGCAAGCAGAGATGAAACCTCCTTGGAGGCAGAAGTGAAAAATGTTGAGGTACAAGAACCTAGAAAATCTTCTGATAAAAAGACCAAGAAGCAAAAATCTTCAAAGTTGCTGTCCTCTGACCAGGCCAAGGACTCTAAGAATTCTGGTATTCAGCAGTCAAAGCAATCAAAAAGTGGGAAATCAGAAAATGATTTGAAATTGAAGTCAGATAATATTGTGGGAAAATCAAGTGACACGGCTTGCTCTCCTCGGAAGATCAGAGATGGGGATGGCAAAATTGCCATTGTGGATAGTCAGCTAGATCAAAGCTGTGCCTCTGCTGTAAATTCCTGGAACGATGGTGAAACTGTTCAAGTGAGGGATGAGTCCAGACTAATTGGGTCTGATTCTGTGCTTAATTCACAAACTCAATCTAGTCAAAGAGCTTGGAAAATTGCTTCGAATTTCAAGCCAAAGTCTTTATTGGAGATTCAGGAGGAAGAGCAGAAAATGGCACATACCGAAACTGTTGTATCAGACATTTCAACTTCTATCAACACAATGAGTTTATCAACTCCTTGGGCTGGAATCGTCAGCAGTTCAGACCCAAAAGCTTCCAGAGAAATTCATAAAGATTCTGTGAATTCAGAATCAAGTGAGAAACATGAAAATTTATTGACTTCAAGAAGTAGAAAGAGCCAATTGCATGATCTGCTGGCTGAAGATGATATGGAAAAGTCTGGTGCAGGTGATGTTCGTGTTTCTGACACTGTTCAGATTGCTTCTTCTCCTCAGGTCATGGCCGTGCGAGCAGAACCTATGGATGAAAATTTTATTGAGGCAAAAGACACAAAAAAGAGCCGCAAGAAGTCTGCTAAGGCTAAGGGTATTGGTACCAAGGCCTCCTCTGCAGTCCCTTCTGCTGATGTGCCTGTTGGTTTAAGTCCCGTTGAGAAGGGGAAAATCTCCCGCCAGACGCAGCAAGAGAAGGAAGCAATGCCCGCCATTCCTTCTGGGCCTTCTTTTGGTGATTTTGTTCTGTGGAAGGGAGAAGTTGCTAATGTGGCCCCTGCTCCAGCATGGTCCAGTGACTCTGGGAAGGTCGCCAAACCCACATCTTTGAGGGATATTCAGATGGAGCAGGAAAGAAAAATCTCTGCTGCTCAGCATTCTCAACAAATCTCTACTCCCCAAAAGGCTCAGCCTACTCAGGTTGGTCGTAGCAGCCGCACTACTACTCCTTCCTGGTCTCTCTCTGCATCTTCCCCATCGAAGGCTGCATCATCCCCCCTTCAGAATATTCCTACTCAGTCAAAACATGGAGGTGATGATGACCTATTTTGGGGCCCCATTGAGTCAAAGCAAGAGAATCAGCGGGTTGATGTACGTCCTGGGAGCCACGGAAACTGGGGAAATAGGAACACCCCTGTAAAAGCAGTAGCTTCAACTGGGTTGTTAAGCCGACAAAAATCATCTGGTGGCAAAGCTGACCATCTTTCGTCCTCGCCTGCACAATCATCTCAGAAAGGCAAGCAAGATCCAATTACCAAACATTCAGAAGCTATGGGCTTCCGTGATTGGTGTGAGAATGAATGTGTAAGGCTCATTGGGACAAAAGACACGAGTTTCCTGGAATTCTGCTTGAAGCAGTCAAGATCTGAGGCAGAGCTGCTTTTGATAGAGAATCTTGGATCATATGATCCCGACCACGAGTTCATCGATCAATTCCTCAATTACAAGGAGTTGCTCCCAGCAGATGTTATTGAAATTGCATTCCGAAGTCGGAACGAGAGGAAGGTATCTGCAATGGCTTCCCGAGATGTGAATTCCGGCAATGCTGGTGGGGGGGATCTGGACCCGGACGTGTCTGCTGGCCGAGATGGGTCGGCGAAAAGTGGAGGAGGAAAGAAGAAAGGAAAGAAAGGAAAGAAGATCAATCCATCAGTTTTGGGGTTTAATGTAGTTAGTAACCGAATCATGATGGGTGAGATTCAGACGGTTGAAGATTAG 5271 44.75 MAGRFDFGSRPNLSVSSPLHAANDVQGSENPIPLSPQWLLPKPGESKHGMGTGENHFSHQPVYGNRMDTMKGSENSEDMNEIQKKKEIFRPSLTDSEIGRRDRWHDEERENSSSVRKDRWRDGEKEIGDGRKMDRWNEDSSTRVFRESRRGPSERWSDSSNRDNVHYDQRRESKWNTRWGPDDKETEGFREKRVDSGRDGDLHLDKNFSHVSNYGKNDRDGDHYRPWRSSSSQGRGKGEPPHHQTQTPIKQVPAFSHRGRADNTPPTFSLGRGIISSGVNPPNSIYSSPHSLGASSEKSGREPYYYKYSRTKLLDVFRTTSLTSQQTLKDGFVPVPTLTLDEPLEPLALCVPTTEEMTFLKGIDKGEIVSSGAPQVSKDGRNSSEFMQTRRTKLGVSPSLGSREDLPHGFDDCNDDKDDSTTKPGHTNYSEVTTERQLPYHRPLAHASSTFKSEAFREDDNAMRKADEGPVSRESSVKGGTNVQHGRTWDASSLEQLLNTSLPDWRDNPNNINSGTPDKGLQSSKNLNDGWGSNSATPSYPKENPKWHTGDESILRRQLSGILDKEQLARKTVQSAPEDLQFHYIDPSGAIQGPFSGADIIQWFEGGYFGLDLPVRLANAPNDLPFSALGDAMPHLRSKAKPPPGFCGPKQNEFADTLGNASIGSLGKLHTGLNEIDPLRNETRHKHGSTVEAENRFLESLMSGNIGSSPLEKSAFSEGLPGYFGNNSNNLPSLGIDNGNNLFLLAKRMELERQRSLSNPYAFWPGIDASSKVSKPDIGLDDPIQQAKLLSSIIDHSRQTSHPQSADMSAILQGLSDKAPPGINDVAGWSKFASQCAPDPLQSKLDLHHDLNLSSQAPFGFQQQRLQPQPPLTNLLAQATDNSTLTPDKFLPSSLSQDPQLIIQLSREKFQIGSQKPLNVLTDHATTYGNIALQATQGASYNVNSEDPSLILPPQMFGNVVQQQKSWTTAIPEQLNDTRPKDVIPGSNVVEGSLLPGMSSKSNEDVNLVPKSSDSHTIIKTSEKISEDVPRLDATVTSFASVDATVEPLPLKNAEISVAIPPPAVHNIEISVPDSVPAVKVQEASMPMEKLARDASRDETSLEAEVKNVEVQEPRKSSDKKTKKQKSSKLLSSDQAKDSKNSGIQQSKQSKSGKSENDLKLKSDNIVGKSSDTACSPRKIRDGDGKIAIVDSQLDQSCASAVNSWNDGETVQVRDESRLIGSDSVLNSQTQSSQRAWKIASNFKPKSLLEIQEEEQKMAHTETVVSDISTSINTMSLSTPWAGIVSSSDPKASREIHKDSVNSESSEKHENLLTSRSRKSQLHDLLAEDDMEKSGAGDVRVSDTVQIASSPQVMAVRAEPMDENFIEAKDTKKSRKKSAKAKGIGTKASSAVPSADVPVGLSPVEKGKISRQTQQEKEAMPAIPSGPSFGDFVLWKGEVANVAPAPAWSSDSGKVAKPTSLRDIQMEQERKISAAQHSQQISTPQKAQPTQVGRSSRTTTPSWSLSASSPSKAASSPLQNIPTQSKHGGDDDLFWGPIESKQENQRVDVRPGSHGNWGNRNTPVKAVASTGLLSRQKSSGGKADHLSSSPAQSSQKGKQDPITKHSEAMGFRDWCENECVRLIGTKDTSFLEFCLKQSRSEAELLLIENLGSYDPDHEFIDQFLNYKELLPADVIEIAFRSRNERKVSAMASRDVNSGNAGGGDLDPDVSAGRDGSAKSGGGKKKGKKGKKINPSVLGFNVVSNRIMMGEIQTVED 1756
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1042038 1051760 - Cp4.1LG11g01920.1 Cpe11g00193 476987

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00193 1756 MobiDBLite consensus disorder prediction 1 264 - -
Cpe11g00193 1756 MobiDBLite consensus disorder prediction 1089 1181 - -
Cpe11g00193 1756 MobiDBLite consensus disorder prediction 1471 1526 - -
Cpe11g00193 1756 MobiDBLite consensus disorder prediction 1532 1548 - -
Cpe11g00193 1756 SMART gyf_5 580 635 IPR003169 GO:0005515
Cpe11g00193 1756 MobiDBLite consensus disorder prediction 371 550 - -
Cpe11g00193 1756 CDD GYF 579 636 IPR003169 GO:0005515
Cpe11g00193 1756 MobiDBLite consensus disorder prediction 452 472 - -
Cpe11g00193 1756 Pfam GYF domain 582 618 IPR003169 GO:0005515
Cpe11g00193 1756 MobiDBLite consensus disorder prediction 475 542 - -
Cpe11g00193 1756 PANTHER GYF DOMAIN-CONTAINING PROTEIN 1 906 - -
Cpe11g00193 1756 MobiDBLite consensus disorder prediction 405 424 - -
Cpe11g00193 1756 PANTHER GYF DOMAIN-CONTAINING PROTEIN 1 906 - -
Cpe11g00193 1756 PANTHER GYF DOMAIN-CONTAINING PROTEIN 904 1756 - -
Cpe11g00193 1756 SUPERFAMILY GYF domain 571 636 IPR035445 -
Cpe11g00193 1756 MobiDBLite consensus disorder prediction 375 396 - -
Cpe11g00193 1756 MobiDBLite consensus disorder prediction 1369 1399 - -
Cpe11g00193 1756 MobiDBLite consensus disorder prediction 10 33 - -
Cpe11g00193 1756 MobiDBLite consensus disorder prediction 1090 1133 - -
Cpe11g00193 1756 Gene3D - 567 647 IPR035445 -
Cpe11g00193 1756 ProSiteProfiles GYF domain profile. 579 630 IPR003169 GO:0005515
Cpe11g00193 1756 MobiDBLite consensus disorder prediction 1688 1734 - -
Cpe11g00193 1756 MobiDBLite consensus disorder prediction 1134 1152 - -
Cpe11g00193 1756 PANTHER GYF DOMAIN-CONTAINING PROTEIN 904 1756 - -
Cpe11g00193 1756 MobiDBLite consensus disorder prediction 1291 1320 - -
Cpe11g00193 1756 MobiDBLite consensus disorder prediction 227 252 - -
Cpe11g00193 1756 MobiDBLite consensus disorder prediction 1555 1599 - -
Cpe11g00193 1756 MobiDBLite consensus disorder prediction 1285 1320 - -
Cpe11g00193 1756 Coils Coil 1092 1112 - -
Cpe11g00193 1756 MobiDBLite consensus disorder prediction 1443 1605 - -
Cpe11g00193 1756 MobiDBLite consensus disorder prediction 71 226 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00193 - - - cmo:103487961 2774.58
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe07g00430 Cpe11g00193 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00984 Cpe-Chr1:5836218 Cpe11g00193 Cpe-Chr11:1042038 1.51E-18 dispersed
Cpe11g00193 Cpe-Chr11:1042038 Cpe17g00925 Cpe-Chr17:7147450 7.67E-45 dispersed
Cpe11g00193 Cpe-Chr11:1042038 Cpe07g00430 Cpe-Chr7:2763378 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g930 Blo01g01558 . Bda01g00536 Bda03g00257 Bpe02g00397 Bpe04g00211 Bma04g00206 Bma01g02315 Cmo05g00241 Cmo12g00428 . . . Car12g00452 Sed11g1026 . Cpe07g00430 Bhi04g00258 Tan02g1949 Cmetu03g2269 . . . Lcy13g1995 Cla08g01498 Cam08g1988 Cec08g1563 Cco08g1700 Clacu08g1678 . Cre08g1461 Cone4ag1904 Cone7ag1818 . . . . . Cme03g01966 . . . . . . . . . . . Cma12g00478 Cma05g00232 Car05g00194 . Cpe11g00193 . . . . . . . . . . . . . . . Lsi08g01403 Csa02g02043 Chy03g01470 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004078 3 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 3 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe11g00193 Cpe_Chr11 FPKM 16.94614 17.92012 17.42392 17.445372 15.868735 15.593898 16.331842 12.389246 14.840093 15.97227