Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00194 ATGGCTTCTTCCACTCTAATCTCTGACTCCGAGGCATGGAAGAGCCTGAAGGCTCATGTTGAGGACATTAACAAGACCCATCTGCGTGATTTGATGAGCGATGCTGCCAGATGCAAATCCTTGATGGTTGAGTATGACGGTGTATTGTTGGATTATTCACGACAACGGGCCACTTCTGACACCATTGGGAAGCTCTTCAAGTTAGCAGAGGCGGCAAATCTTAAGGATAAAATTAATCGGATGTTCAATGGGGAACATATAAACAGCACAGAAAATAGGGCAGTGCTGCATGTTGCTCTTCGTGCGTCAAGAGATGCAACAATACAGAGTAATGGAAAGAATGTTGTGCCTGATGTTTGGAAAGTTCTTGATAAAATCCAGGATTTCTCTGAGAAAGTTCGCAATGGTTCTTGGGTTGGAGCCACAGGAAAATCGCTGAAGGATGTTGTTGCTATTGGTATTGGTGGCAGCTTCTTGGGGCCTCTGTTTGTGCACACTGCACTTCAAACAGATCCAGAGGCTATTAAGTCTGCAGAAGGACGTCAATTACGTTTTCTTGCGAATGTGGATCCCATTGATGTGGCGAGAAATATCACTGGTTTAAACCCTGAAACTACTTTGGTTGTGGTGGTTTCAAAGACTTTTACCACTGCTGAAACTATGTTAAATGCCCGGACACTAAGGGAGTGGATTTCTGCTGCTCTTGGGCCTTCAGCTGTTGCAAAGCATATGGTAGCAGTTAGCACAAATCTCCCGCTTGTAGAGAAGTTTGGAATTGATCCTAATAATGCCTTTGCCTTCTGGGACTGGGTTGGTGGACGATATAGTGTTTGCAGTGCCGTAGGAGTGTTGCCTTTGTCTCTTCAATATGGCTTCCCAGTTGTTGAAAGATTCTTGAAGGGAGCTTCAAGCATTGACCAGCATTTCTACTCCTCACCTTTTGAGAAAAACATTCCAGTGCTTTTGGGATTGTTGAGCGTATGGAATGTTTCTTTTCTTGGGCATGCTGCGAGAGTAAGTTCTTATGATCTTGTTTGCCATCTTACCTTATTCCCAGGCTTTAGAGAAGTTTGCTCCACACATTCAGCAGGCATGCAGCTAAACTCTATGAATACTTTTCTCCCCAGCGGTGAGGTCGTGAGTAATCATGATGAACTCATGTCTAACTTCTTTGCACAGCCAGATGCCCTAGCATATGGAAAGACGCCTGAGCAATTGCACAAGGAGAATGTTCCAGAGCATCTTATTTCCCACAAGACATTTTCTGGCAATCGGCCTTCTCTCAGCATTCTTCTTCCATCACTAAATGCTTACAACATTGGTCAGTTGCTAGCAATCTATGAGCATAGAGTTGCTGTAGAAGGTTTTGTTTGGGGCATCAATTCTTTTGACCAGTGGGGAGTTGAATTGGGCAAGTCACTTGCTACCCAGGTCAGAAAGCAACTTAATGCGTCTAGAACTAAGGGAGAATCAATTGAAGGCTTTAACCACAGTACAACAACATTGATGAAAAGATACCTAGAGGCAAGTTCGGATGTCCCATCTGATCTTCCCACTCTTCTACCCAGAATTTGA 1575 44.06 MASSTLISDSEAWKSLKAHVEDINKTHLRDLMSDAARCKSLMVEYDGVLLDYSRQRATSDTIGKLFKLAEAANLKDKINRMFNGEHINSTENRAVLHVALRASRDATIQSNGKNVVPDVWKVLDKIQDFSEKVRNGSWVGATGKSLKDVVAIGIGGSFLGPLFVHTALQTDPEAIKSAEGRQLRFLANVDPIDVARNITGLNPETTLVVVVSKTFTTAETMLNARTLREWISAALGPSAVAKHMVAVSTNLPLVEKFGIDPNNAFAFWDWVGGRYSVCSAVGVLPLSLQYGFPVVERFLKGASSIDQHFYSSPFEKNIPVLLGLLSVWNVSFLGHAARVSSYDLVCHLTLFPGFREVCSTHSAGMQLNSMNTFLPSGEVVSNHDELMSNFFAQPDALAYGKTPEQLHKENVPEHLISHKTFSGNRPSLSILLPSLNAYNIGQLLAIYEHRVAVEGFVWGINSFDQWGVELGKSLATQVRKQLNASRTKGESIEGFNHSTTTLMKRYLEASSDVPSDLPTLLPRI 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1053579 1061712 - Cp4.1LG11g01970.1 Cpe11g00194 476988

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00194 524 Hamap Glucose-6-phosphate isomerase [pgi]. 45 482 IPR001672 GO:0004347|GO:0006094|GO:0006096
Cpe11g00194 524 ProSitePatterns Phosphoglucose isomerase signature 1. 269 282 IPR018189 GO:0004347|GO:0006094|GO:0006096
Cpe11g00194 524 PANTHER GLUCOSE-6-PHOSPHATE ISOMERASE 7 343 IPR001672 GO:0004347|GO:0006094|GO:0006096
Cpe11g00194 524 PANTHER GLUCOSE-6-PHOSPHATE ISOMERASE 380 510 IPR001672 GO:0004347|GO:0006094|GO:0006096
Cpe11g00194 524 ProSitePatterns Phosphoglucose isomerase signature 2. 455 472 IPR018189 GO:0004347|GO:0006094|GO:0006096
Cpe11g00194 524 ProSiteProfiles Glucose-6-phosphate isomerase family profile. 10 509 IPR001672 GO:0004347|GO:0006094|GO:0006096
Cpe11g00194 524 Gene3D - 97 296 - -
Cpe11g00194 524 Coils Coil 524 524 - -
Cpe11g00194 524 Gene3D - 465 510 IPR023096 GO:0004347|GO:0006096
Cpe11g00194 524 Gene3D - 381 464 - -
Cpe11g00194 524 CDD SIS_PGI_1 120 288 IPR035476 -
Cpe11g00194 524 CDD SIS_PGI_2 367 478 IPR035482 -
Cpe11g00194 524 Pfam Phosphoglucose isomerase 378 502 IPR001672 GO:0004347|GO:0006094|GO:0006096
Cpe11g00194 524 Pfam Phosphoglucose isomerase 51 368 IPR001672 GO:0004347|GO:0006094|GO:0006096
Cpe11g00194 524 SUPERFAMILY SIS domain 8 510 IPR046348 GO:0097367|GO:1901135
Cpe11g00194 524 PANTHER GLUCOSE-6-PHOSPHATE ISOMERASE 7 343 - -
Cpe11g00194 524 PANTHER GLUCOSE-6-PHOSPHATE ISOMERASE 380 510 - -
Cpe11g00194 524 Gene3D - 12 369 - -
Cpe11g00194 524 PRINTS Glucose-6-phosphate isomerase signature 441 455 IPR001672 GO:0004347|GO:0006094|GO:0006096
Cpe11g00194 524 PRINTS Glucose-6-phosphate isomerase signature 455 468 IPR001672 GO:0004347|GO:0006094|GO:0006096
Cpe11g00194 524 PRINTS Glucose-6-phosphate isomerase signature 423 441 IPR001672 GO:0004347|GO:0006094|GO:0006096
Cpe11g00194 524 PRINTS Glucose-6-phosphate isomerase signature 149 168 IPR001672 GO:0004347|GO:0006094|GO:0006096
Cpe11g00194 524 PRINTS Glucose-6-phosphate isomerase signature 265 283 IPR001672 GO:0004347|GO:0006094|GO:0006096
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00194 K01810 GPI, pgi; glucose-6-phosphate isomerase [EC:5.3.1.9] - csv:101217944 903.279
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe07g00429 Cpe11g00194 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00158 Cpe-Chr7:928089 Cpe11g00194 Cpe-Chr11:1053579 9.01E-24 transposed
Cpe11g00194 Cpe-Chr11:1053579 Cpe07g00429 Cpe-Chr7:2754201 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g932 Blo01g01559 . Bda01g00534 . Bpe02g00396 . . Bma01g02316 Cmo05g00243 Cmo12g00427 . . . Car12g00451 . . Cpe07g00429 Bhi04g00254 . . . . . . Cla08g01496 Cam08g1986 Cec08g1561 Cco08g1698 Clacu08g1676 . Cre08g1459 Cone4ag1905 Cone7ag1820 . . . . . Cme03g01964 . . . . . . . . . . . Cma12g00477 Cma05g00235 Car05g00195 . Cpe11g00194 . . . . . . . . . . . . . . . Lsi08g01401 Csa02g02045 Chy03g01468 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004710 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe11g00194 Cpe_Chr11 FPKM 5.980989 7.276659 6.860783 6.378898 7.910497 6.162008 8.85039 2.253567 2.301007 2.654039