Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00201 ATGACAACGATCGGATTCCGCCTTATCTCGGTTCCATCCGCCGTCTCACCACTCTCTCTACTTTCTCATAGACCGAACAATGATCAAAGCCAAGCGCTACGCCATAACCTTCCGATTACAACATCTCGCCGAGGCCTCACTATGCTCTCATTTCTCTCTGCGATGCCGTCTCTGTTTCTACCTGCTCCCGCCACTGCTTTCGATATCGGCATTTCAGGACCAAAGGATTGGCTGAGGGAGCAGAAGAGGAAGGCCTCCAGGTTCCTCTTGGCTCCAATTGAGGCCTCCAGAGGCAGCCTTCACGCAGTTTACCTTATGCTTTCCAATGATTCCGACTACTCAAACAAGGATATGGAGGACGTTCAAAGAATGCTGAAGTCTGCTGCAAGGGATTGCGTTTTGAAGGACAGGAATTCGTTCGTTCAATTCCAAGCGAGCACTGGAGTCGAGGTCTGTACATTTCAATTGATTGTGAAAAATGCCGCCTCCTTGCTTGGAAACGAAGATCCTATAAAACTAGAAGCTGAAAGTCGATTAAAAGATCTAGTAAGCTCGTTCACTTCTCTTAATAGTCTTGCATATGAAACTGATATTCAAGTCAATTCCAACAGACAAAAAGTACTGGATGCAGTAAATGATACCATAGATTCCCTCGACAAATTTGAGAAGGGTATTAAGGATTGTCTTGAAATTTAA 696 45.11 MTTIGFRLISVPSAVSPLSLLSHRPNNDQSQALRHNLPITTSRRGLTMLSFLSAMPSLFLPAPATAFDIGISGPKDWLREQKRKASRFLLAPIEASRGSLHAVYLMLSNDSDYSNKDMEDVQRMLKSAARDCVLKDRNSFVQFQASTGVEVCTFQLIVKNAASLLGNEDPIKLEAESRLKDLVSSFTSLNSLAYETDIQVNSNRQKVLDAVNDTIDSLDKFEKGIKDCLEI 231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1088907 1094309 + Cp4.1LG11g02020.1 Cpe11g00201 476995

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00201 231 PANTHER PLASMA MEMBRANE FUSION PROTEIN 17 231 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00201 - - - csv:101216764 379.793
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g00201 Cpe-Chr11:1088907 Cpe07g00423 Cpe-Chr7:2722717 1.14E-10 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g944 . . . . . . . . Cmo05g00250 . . . . . . . . Bhi04g00169 . . . Hepe10g0636 . . . . . . . . . . . Cone17ag1341 Cone20ag0140 . . . . Blo17g00802 . Bda08g01286 . . Bpe05g00089 . Bma05g00118 . . . . Cma05g00242 Car05g00203 . Cpe11g00201 . . . . . . . . . . . . . . . . . Chy03g01459 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009289 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe11g00201 Cpe_Chr11 FPKM 28.227545 29.917038 25.38106 26.170635 27.211086 25.815195 26.701168 44.693302 47.227573 44.566536