Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00210 ATGGAACGAGAAAGAAATGGGATCGCAGCAATAGGGTTCAGTCACCCCCTCCCACCCATTTCTCGTCACTGCACACTGCACGCCGTCCCTGCTCGACGCCGTCTCAACGGCTGCCACCACACGCTGCATTCTCAGCTGCCGCCGTCTCAGCCTTCCGCCGCTCATTTCTCTGATCTGCAAGGAACAGCTGATTTGAAAAGGGCTAAGGGACCGAAGATGAGCCTAAAGCATTTACTCCATCGTCGAACACTGAAGGATTTTTGGAGAATCAATGGCAACATACACCGTTGTCAATCGGCTGTCAACATCAATGTCACTTGCACTTTCATCACATCACCTTCATTTGCTTTGCTCGATCGACACTACGGTTGTTATTCTTCAGTTCCTGTCAGGAATTTTGAGCTTGGAAAATCGAATTTAATTTTCAGTAGGTGCATTCACTCCACTGTAACTAAGTTGAGTGATGCAGCAATGGAGCCAAAACTTGAGTCTGCAGATGTTGAGGAAGATGACGGATCAATGAATGAGTTCTTATCCAGATTTGTCTGGATAATGCGTGGGAAGATTTCTGAAACATTTCCGGACTATGATAAGAAGACAGTCGATGCAATGCTTTTGATGATCGTGGAAAAAGTAGTATCTGAAATGGAAAAGGGTAGCTTTGAGCAGTCATTAAAGGCTTCAGCTGAGAATCGAGATTGGGACCTAAGCGAGGATTTGTGGAAGACAGTAAGTGAAGTTAGCAACATGGTTTTGGATGATATGAAGAAGGCTACAAAAAAGGAGAAAATGAAGGGTTTTCTGCTGTCTGAGGAAGTTCAAGAAATGTGTAGGTTTGCTGGGGAAGTTGGCATTCGAGGCGATATGCTGAGGGAATTTAGGTTCAAATGGGCCCGTGAAAAAATGGAGGAAAGCGAGTTCTATGAAAGTTTGGAGCAGCTAAAAAAAGAGGCTTGTACCCAGGAAGAAAACAATGATTCTCCGAGCAGTGTAGAGGCTGCATCCGAGGTGAAATCCGAGGCTGTTTCACTTCCCAAAAGGCGAGGGAAGATAAAGTACAAGATTTATGGTCTTGATTTATCTGATCCCAAGTGGAGTGAAGTAGCAGACAAAGTCCATGAGGCAGAGGAGGTGTTATGGCCCCAGGAACCGAAACCAATTTCTGGCAAATGCAAACTGGTCACGGAGAGAATTCTTTCATTAAATGATAACGAAGACCCGTCGCCATTATTGGCTGAATGGAAAGATCTTCTTCAACCCACTAGGGTTGACTGGATTGCCTTACTCGACAAATTGAACGAGAGTAATAGATTCTTATACTTGAAGGTTGCAGAACTTCTTTTGAGTGAAGAGTCTTTTCAGACCGACATCCGTGACTACTCTAAGCTTGTCGATGTCCATGCTAAAGAGAACCGCCTCGAGGATGCCGAAAGGATTCTTAAGAAGATGAACGAGAAGGGCATTACACCAGACATTTTGACAGCCTCAGTTTTAGTTCATATGTATAGCAAGGTGGGCAATCTTGATCGTGCAAAGGAAGCTTTTGATACCTTAAGGAGTCATGGGTTCCAGCCAGATGAGAAGGTTTATAATTCCATGATAATGGCATTTGTAAATGCTGGACAACCCAAGTTGGGCGAGTCGCTGATGAGAGAGATGGAAGCAAGGGACATTAAACCCAGCCAGGACATTTACATGGCATTACTAAGGTCATTTTCCCAACGTGGCGATATTAGTGGCGCTGGAAGAATTTCCGCTACTATGCAGTTTGCTGGCTTCTCGCCAAGTTTGGAGTCCTGTACATTGCTCGTTGAGGCATACGGGCAAGCTGGTGATCCCGATCAGGCAAGGAACAATTTTGACTACATGATAAAAATTGGGCACAGGCCTGATGACAGGTGCACTGCAAGTATGGTTGCAGCCTATGAAAAGAAGAATCTGTTGGACAAGGCTTTGAATCTTTTACTACAGCTCGAAAAGGATGGATTTGAGCCCGGGGTTGCAACTTATGCCGTTCTTATAGATTGGTTGGGCAAGTTGCAGCTGGTTGATGAAGCTGAGCAGATCTTAGGCAAGATCGGCGCGCAGGGTGACACCCTCCCTTTTAAGGTTCATATTAGCCTATGTGATATGTACTCGAGAGCTGGGATTGAAAAAAAGGCGCTGCAAGCTCTCGGGGTCTTGGAAGCTAAAAAGGAGGAGTTGGGACATGGTGATTTTGAGAGGATCATAAACGGACTCATAGCAGGCGGGTTTGTGCAGGATGCTAAAAGATTGCAGGGTGTTATGGAGGCCCAGGGTTTCACTGCTTCCCAATCACTTCAAATGGCTCTGAGGACATCTCAAGCTCTTCGTGGCAGGAGACTGCCTTGA 2373 45.64 MERERNGIAAIGFSHPLPPISRHCTLHAVPARRRLNGCHHTLHSQLPPSQPSAAHFSDLQGTADLKRAKGPKMSLKHLLHRRTLKDFWRINGNIHRCQSAVNINVTCTFITSPSFALLDRHYGCYSSVPVRNFELGKSNLIFSRCIHSTVTKLSDAAMEPKLESADVEEDDGSMNEFLSRFVWIMRGKISETFPDYDKKTVDAMLLMIVEKVVSEMEKGSFEQSLKASAENRDWDLSEDLWKTVSEVSNMVLDDMKKATKKEKMKGFLLSEEVQEMCRFAGEVGIRGDMLREFRFKWAREKMEESEFYESLEQLKKEACTQEENNDSPSSVEAASEVKSEAVSLPKRRGKIKYKIYGLDLSDPKWSEVADKVHEAEEVLWPQEPKPISGKCKLVTERILSLNDNEDPSPLLAEWKDLLQPTRVDWIALLDKLNESNRFLYLKVAELLLSEESFQTDIRDYSKLVDVHAKENRLEDAERILKKMNEKGITPDILTASVLVHMYSKVGNLDRAKEAFDTLRSHGFQPDEKVYNSMIMAFVNAGQPKLGESLMREMEARDIKPSQDIYMALLRSFSQRGDISGAGRISATMQFAGFSPSLESCTLLVEAYGQAGDPDQARNNFDYMIKIGHRPDDRCTASMVAAYEKKNLLDKALNLLLQLEKDGFEPGVATYAVLIDWLGKLQLVDEAEQILGKIGAQGDTLPFKVHISLCDMYSRAGIEKKALQALGVLEAKKEELGHGDFERIINGLIAGGFVQDAKRLQGVMEAQGFTASQSLQMALRTSQALRGRRLP 790
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1129667 1135091 - Cp4.1LG11g02150.1 Cpe11g00210 477004

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00210 790 Gene3D Tetratricopeptide repeat domain 570 786 IPR011990 GO:0005515
Cpe11g00210 790 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 491 525 IPR002885 -
Cpe11g00210 790 SUPERFAMILY TPR-like 214 626 IPR011990 GO:0005515
Cpe11g00210 790 Gene3D Tetratricopeptide repeat domain 405 542 IPR011990 GO:0005515
Cpe11g00210 790 PANTHER OS07G0661900 PROTEIN 73 788 IPR044657 -
Cpe11g00210 790 Pfam PPR repeat 637 663 IPR002885 -
Cpe11g00210 790 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 631 665 IPR002885 -
Cpe11g00210 790 PANTHER PROTEIN NUCLEAR FUSION DEFECTIVE 5, MITOCHONDRIAL 73 788 - -
Cpe11g00210 790 Pfam Pentatricopeptide repeat domain 548 608 IPR002885 -
Cpe11g00210 790 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 526 560 IPR002885 -
Cpe11g00210 790 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 456 490 IPR002885 -
Cpe11g00210 790 Coils Coil 466 486 - -
Cpe11g00210 790 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 596 630 IPR002885 -
Cpe11g00210 790 TIGRFAM PPR: pentatricopeptide repeat domain 460 492 IPR002885 -
Cpe11g00210 790 TIGRFAM PPR: pentatricopeptide repeat domain 496 527 IPR002885 -
Cpe11g00210 790 TIGRFAM PPR: pentatricopeptide repeat domain 529 561 IPR002885 -
Cpe11g00210 790 Pfam Pentacotripeptide-repeat region of PRORP 460 542 IPR033443 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00210 - - - mcha:111013946 1207.97
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g00210 Cpe-Chr11:1129667 Cpe11g00795 Cpe-Chr11:6427511 8.27E-13 dispersed
Cpe03g01683 Cpe-Chr3:12824901 Cpe11g00210 Cpe-Chr11:1129667 6.33E-64 transposed
Cpe11g00210 Cpe-Chr11:1129667 Cpe07g00410 Cpe-Chr7:2672349 2.87E-06 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g957 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1917 Cone7ag1828 . . . . . . Blo17g00795 . Bda08g01279 . . Bpe05g00093 . . . . . . . . . Cpe11g00210 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010753 0 1 1 0 1 1 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 0 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe11g00210 Cpe_Chr11 FPKM 24.425615 27.50548 21.408628 20.868471 24.888523 28.112392 24.520338 20.608356 22.964954 21.761467