Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00224 ATGGATTATCCAGTAACCCCATCCACTAGAGCCTGTGGAGGAGGCGCCACGTCCACACCTGCGGCATCTTCTGATCTTCATTTGAAACTGGCGATTCCTTGCCAAACAAAGCCTCCAATTTCCGTCCCCGCTTCAATTATCAAAACCAAACCCCTTAAATTCTCCTCAAAACCAACTCAAACTACTATATTTTTCACCCAGAAATCCAGTTCGAAGTCCAATGACGACCATTTGAGTTACCTTTGCCGCCATGGCCTCCTCCGAGAAGCCATATCCGCCATTGATTCAATGTCCAGACATGGGTCTAAAATAATACAAGCTTGTGGGAATTGCGAGGATCTTGAAACTTTGAAGTTGATGCATTCTNAGTGCGAGGAGCTTGAAACTTTGAAGTTGATGCATTCTGTGAAGAAGATGGAAAGTATGGGGATCACTCCTGATGTCTATACTTGGACTTCGATGATTTCGGGTTTTGCTCAAAGCAGCAGGATTAATCTGGCATTGGATTTCTTCAAGGAGATGATTCTAGCAGGGGTTGAACCAAATGCTGTAACTATTACGAGCGTGACGTCGGCGGAATCAAATGTAATGCCTAATGTTGTGACATGGAATGTGATGATATCAGGGTGTATACACAATGGAGATGAGGATCAAGCTATGAACCTCTTTCAAATGATGGAAAATGATGAGGAGGTTAATCCGAACACGGCGTCCTGGAATTCTCTGATTGCGGGGTACCACCGGCTCGGTGAAAAGAACAAAGCTCTAGCAATATTTCGACAAATGCAGTCTCTTAATTTTAATCCTAATTCAGTGACTATCTTGAGTATCTTACCAGTTTGTGCAAATGTAATGGCAGAGAAGAAAATAAAGGAAATCCATGGCTGTGTGTTGCGTAGAAACCTGGAATCGGAGCTTCCTGTTGCGAACTCGCTTATAGACACGTATGCCAAGTCGGGGAACATTCAATATTCAAGAAACATCTTTGATGGCATGTCGTCAAAAGATATTATCACCTGGAATTCAATTATTGCAGGATATATTTTACATGGTTGCTCAGATGCTGCATTTCATTTGTTCGATCAGATGAAAAGGTTTGGAATTAGGCCGAACCGAGGTACACTGGCTAGTATTATTTATGCCTGTGGCATTGCTGGGATGGTCGACAGGGGACGACATGTTTTTTCTAGCATCACTGAAGAACATCAAATTCTGCCAACTTTAGATCATTATTCAGCTATGGTTGATCTTTATGGACGTTCTGGGAGGCTTACCGATGCAATCGAGTTCATCGAAAACATGCCTACAGAACCAGATGTCTCCATCTGGACCAGCCTACTGACTGCCTCGAGGTTTCATGGGAACTTACACTTGGCAGTACGAGCAGCCGAGCACCTACTTGAATTGGAGCCTGATAATCATGTGATTTACCGTTTATTAATACAGGCATATGCTTTATATGGGAAATCTGAACAAGCTTTAAAAGTGAGAAAGCTTGGAAGAGAGAGTGCAATGAAGAAATGTACAGCACAGTGCTGGGTTGAAGTCGGGAACAAAGTCTATTTTTTCGTCAATGGCGATCATTCCAAAGTCGACGTTCTAAATACTTGGATAAAAGGCATTGTAGGGAAA 1632 42.71 MDYPVTPSTRACGGGATSTPAASSDLHLKLAIPCQTKPPISVPASIIKTKPLKFSSKPTQTTIFFTQKSSSKSNDDHLSYLCRHGLLREAISAIDSMSRHGSKIIQACGNCEDLETLKLMHSXCEELETLKLMHSVKKMESMGITPDVYTWTSMISGFAQSSRINLALDFFKEMILAGVEPNAVTITSVTSAESNVMPNVVTWNVMISGCIHNGDEDQAMNLFQMMENDEEVNPNTASWNSLIAGYHRLGEKNKALAIFRQMQSLNFNPNSVTILSILPVCANVMAEKKIKEIHGCVLRRNLESELPVANSLIDTYAKSGNIQYSRNIFDGMSSKDIITWNSIIAGYILHGCSDAAFHLFDQMKRFGIRPNRGTLASIIYACGIAGMVDRGRHVFSSITEEHQILPTLDHYSAMVDLYGRSGRLTDAIEFIENMPTEPDVSIWTSLLTASRFHGNLHLAVRAAEHLLELEPDNHVIYRLLIQAYALYGKSEQALKVRKLGRESAMKKCTAQCWVEVGNKVYFFVNGDHSKVDVLNTWIKGIVGK 544
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1205351 1208129 - Cp4.1LG11g02370.1 Cpe11g00224 477018

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00224 544 Gene3D Tetratricopeptide repeat domain 194 269 IPR011990 GO:0005515
Cpe11g00224 544 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 199 229 IPR002885 -
Cpe11g00224 544 TIGRFAM PPR: pentatricopeptide repeat domain 149 183 IPR002885 -
Cpe11g00224 544 TIGRFAM PPR: pentatricopeptide repeat domain 201 235 IPR002885 -
Cpe11g00224 544 TIGRFAM PPR: pentatricopeptide repeat domain 338 371 IPR002885 -
Cpe11g00224 544 TIGRFAM PPR: pentatricopeptide repeat domain 238 270 IPR002885 -
Cpe11g00224 544 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 147 181 IPR002885 -
Cpe11g00224 544 SUPERFAMILY TPR-like 416 498 IPR011990 GO:0005515
Cpe11g00224 544 Pfam E motif 453 515 IPR046848 -
Cpe11g00224 544 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 235 269 IPR002885 -
Cpe11g00224 544 Pfam PPR repeat 201 228 IPR002885 -
Cpe11g00224 544 Pfam PPR repeat 81 101 IPR002885 -
Cpe11g00224 544 Pfam PPR repeat 410 435 IPR002885 -
Cpe11g00224 544 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 336 370 IPR002885 -
Cpe11g00224 544 Pfam PPR repeat family 146 189 IPR002885 -
Cpe11g00224 544 Pfam PPR repeat family 335 382 IPR002885 -
Cpe11g00224 544 Pfam PPR repeat family 234 280 IPR002885 -
Cpe11g00224 544 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 121 192 - -
Cpe11g00224 544 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 268 534 - -
Cpe11g00224 544 PANTHER BNAA06G13890D PROTEIN 268 534 - -
Cpe11g00224 544 Gene3D Tetratricopeptide repeat domain 288 386 IPR011990 GO:0005515
Cpe11g00224 544 Gene3D Tetratricopeptide repeat domain 387 507 IPR011990 GO:0005515
Cpe11g00224 544 Gene3D Tetratricopeptide repeat domain 60 193 IPR011990 GO:0005515
Cpe11g00224 544 PANTHER BNAA06G13890D PROTEIN 121 192 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00224 - - - cmos:111462963 730.709
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g00224 Cpe-Chr11:1205351 Cpe04g01151 Cpe-Chr4:9869981 1.74E-29 dispersed
Cpe11g00224 Cpe-Chr11:1205351 Cpe02g00151 Cpe-Chr2:777503 4.70E-15 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1013 . . . . . . . . Cmo05g00276 . . . . . . . . Bhi04g00208 . . . . . . . . . . . . . . . . Cone20ag0115 . . . . . . . . . . . . . . . . Cma05g00271 Car05g00224 . Cpe11g00224 . . . . . . . . . . . . . . . . Csa02g02091 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002824 2 1 2 2 1 2 2 2 2 1 1 2 3 1 1 3 2 2 3 2 2 2 2 1 0 1 1 2 3 2 53
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe11g00224 Cpe_Chr11 FPKM 2.709365 3.488158 5.551868 5.42153 0.856352 0.54373 0.750321 2.092355 1.083925 1.780437