Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe11g00227 | ATGGACACGATTTATTCAATTCTTCTTGCCAAGTATCATCCACATCCCTCCGCCGGCCACGTTTCATCCTCCTCCCACTTTCTCGCTCTAACTCCAATTCTTTTATACTCGCCTTCCATTCACATCCCCCCTGCAATCTCCTCCTCGTCCATGTTGAAATCAAGCAAGCAAGTTAAAAGGTCCCCTTCAGCTTCCCATGCCACTTCTAGAAAGGGCTGTATGAGAGGCAAAGGAGGCCCTGAAAACGCTTCCTGCACTTATAAAGGCGTGCGCCAGAGGACATGGGGTAAATGGGTTGCTGAAATTCGAGAGCCCAATCGCGGGGCTCGTCTTTGGCTTGGCACGTTCGACACATCCCATGATGCCGCTATGGCTTATGACAATGCCGCTCGGCGTCTTTATGGCTCTGAGGCTAAACTCAATCTCCCTCATCTTTCCCCCAATTTGCAGCACCATAATCACCCTCTGCTTCTTCCTGTCTCTGTTTCCTCTTCCTCCGACAGTGCGGCTGCCACGGTGGAAGATGTCGGGTCCATCAGCTCAGCTCCCCATGACAACAGTAGCAGCAGGATGAGATTTGGGGAGGAGGAGGAGGAGGAGATTGGGGGGCTTTGGAGATCGATGAGTATTAGCTTGGATGATTCCATTTGGGCTGAAGCAGCCATGTCTTTGGATTTTCCTGTCGTGGAAGATCGAGATCGTCAAGGCGTTTTTGCTGCTGATTTTGTGGATTCTAATGGATGGGATACTCTCCAATGGTGTTCTTGA | 768 | 50.65 | MDTIYSILLAKYHPHPSAGHVSSSSHFLALTPILLYSPSIHIPPAISSSSMLKSSKQVKRSPSASHATSRKGCMRGKGGPENASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHDAAMAYDNAARRLYGSEAKLNLPHLSPNLQHHNHPLLLPVSVSSSSDSAAATVEDVGSISSAPHDNSSSRMRFGEEEEEEIGGLWRSMSISLDDSIWAEAAMSLDFPVVEDRDRQGVFAADFVDSNGWDTLQWCS | 255 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 1215130 | 1215897 | + | Cp4.1LG11g02220.1 | Cpe11g00227 | 477021 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe11g00227 | 255 | CDD | AP2 | 85 | 145 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe11g00227 | 255 | MobiDBLite | consensus disorder prediction | 172 | 188 | - | - | |
Cpe11g00227 | 255 | MobiDBLite | consensus disorder prediction | 172 | 193 | - | - | |
Cpe11g00227 | 255 | SUPERFAMILY | DNA-binding domain | 86 | 144 | IPR016177 | GO:0003677 | |
Cpe11g00227 | 255 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D | 64 | 249 | - | - | |
Cpe11g00227 | 255 | MobiDBLite | consensus disorder prediction | 51 | 85 | - | - | |
Cpe11g00227 | 255 | SMART | rav1_2 | 86 | 149 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe11g00227 | 255 | ProSiteProfiles | AP2/ERF domain profile. | 86 | 143 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe11g00227 | 255 | Gene3D | AP2/ERF domain | 86 | 144 | IPR036955 | GO:0003700|GO:0006355 | |
Cpe11g00227 | 255 | Pfam | AP2 domain | 86 | 135 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe11g00227 | 255 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C | 64 | 249 | - | - | |
Cpe11g00227 | 255 | MobiDBLite | consensus disorder prediction | 51 | 68 | - | - | |
Cpe11g00227 | 255 | PRINTS | Ethylene responsive element binding protein signature | 87 | 98 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe11g00227 | 255 | PRINTS | Ethylene responsive element binding protein signature | 109 | 125 | IPR001471 | GO:0003700|GO:0006355 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe07g00392 | Cpe11g00227 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe11g00227 | Cpe-Chr11:1215130 | Cpe12g00557 | Cpe-Chr12:5679142 | 8.33E-23 | dispersed | |
Cpe01g02506 | Cpe-Chr1:20591652 | Cpe11g00227 | Cpe-Chr11:1215130 | 8.89E-30 | transposed | |
Cpe10g00974 | Cpe-Chr10:5509681 | Cpe11g00227 | Cpe-Chr11:1215130 | 2.01E-32 | transposed | |
Cpe11g00227 | Cpe-Chr11:1215130 | Cpe07g00392 | Cpe-Chr7:2537568 | 8.66E-87 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
50211 | PF00847 | AP2 | 3.30E-14 | CL0081 | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe11g00227 | - | - | cpep:111805867 | 448.358 |