Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00227 ATGGACACGATTTATTCAATTCTTCTTGCCAAGTATCATCCACATCCCTCCGCCGGCCACGTTTCATCCTCCTCCCACTTTCTCGCTCTAACTCCAATTCTTTTATACTCGCCTTCCATTCACATCCCCCCTGCAATCTCCTCCTCGTCCATGTTGAAATCAAGCAAGCAAGTTAAAAGGTCCCCTTCAGCTTCCCATGCCACTTCTAGAAAGGGCTGTATGAGAGGCAAAGGAGGCCCTGAAAACGCTTCCTGCACTTATAAAGGCGTGCGCCAGAGGACATGGGGTAAATGGGTTGCTGAAATTCGAGAGCCCAATCGCGGGGCTCGTCTTTGGCTTGGCACGTTCGACACATCCCATGATGCCGCTATGGCTTATGACAATGCCGCTCGGCGTCTTTATGGCTCTGAGGCTAAACTCAATCTCCCTCATCTTTCCCCCAATTTGCAGCACCATAATCACCCTCTGCTTCTTCCTGTCTCTGTTTCCTCTTCCTCCGACAGTGCGGCTGCCACGGTGGAAGATGTCGGGTCCATCAGCTCAGCTCCCCATGACAACAGTAGCAGCAGGATGAGATTTGGGGAGGAGGAGGAGGAGGAGATTGGGGGGCTTTGGAGATCGATGAGTATTAGCTTGGATGATTCCATTTGGGCTGAAGCAGCCATGTCTTTGGATTTTCCTGTCGTGGAAGATCGAGATCGTCAAGGCGTTTTTGCTGCTGATTTTGTGGATTCTAATGGATGGGATACTCTCCAATGGTGTTCTTGA 768 50.65 MDTIYSILLAKYHPHPSAGHVSSSSHFLALTPILLYSPSIHIPPAISSSSMLKSSKQVKRSPSASHATSRKGCMRGKGGPENASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHDAAMAYDNAARRLYGSEAKLNLPHLSPNLQHHNHPLLLPVSVSSSSDSAAATVEDVGSISSAPHDNSSSRMRFGEEEEEEIGGLWRSMSISLDDSIWAEAAMSLDFPVVEDRDRQGVFAADFVDSNGWDTLQWCS 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1215130 1215897 + Cp4.1LG11g02220.1 Cpe11g00227 477021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00227 255 CDD AP2 85 145 IPR001471 GO:0003700|GO:0006355
Cpe11g00227 255 MobiDBLite consensus disorder prediction 172 188 - -
Cpe11g00227 255 MobiDBLite consensus disorder prediction 172 193 - -
Cpe11g00227 255 SUPERFAMILY DNA-binding domain 86 144 IPR016177 GO:0003677
Cpe11g00227 255 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D 64 249 - -
Cpe11g00227 255 MobiDBLite consensus disorder prediction 51 85 - -
Cpe11g00227 255 SMART rav1_2 86 149 IPR001471 GO:0003700|GO:0006355
Cpe11g00227 255 ProSiteProfiles AP2/ERF domain profile. 86 143 IPR001471 GO:0003700|GO:0006355
Cpe11g00227 255 Gene3D AP2/ERF domain 86 144 IPR036955 GO:0003700|GO:0006355
Cpe11g00227 255 Pfam AP2 domain 86 135 IPR001471 GO:0003700|GO:0006355
Cpe11g00227 255 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 64 249 - -
Cpe11g00227 255 MobiDBLite consensus disorder prediction 51 68 - -
Cpe11g00227 255 PRINTS Ethylene responsive element binding protein signature 87 98 IPR001471 GO:0003700|GO:0006355
Cpe11g00227 255 PRINTS Ethylene responsive element binding protein signature 109 125 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe07g00392 Cpe11g00227 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g00227 Cpe-Chr11:1215130 Cpe12g00557 Cpe-Chr12:5679142 8.33E-23 dispersed
Cpe01g02506 Cpe-Chr1:20591652 Cpe11g00227 Cpe-Chr11:1215130 8.89E-30 transposed
Cpe10g00974 Cpe-Chr10:5509681 Cpe11g00227 Cpe-Chr11:1215130 2.01E-32 transposed
Cpe11g00227 Cpe-Chr11:1215130 Cpe07g00392 Cpe-Chr7:2537568 8.66E-87 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50211 PF00847 AP2 3.30E-14 CL0081 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00227 - - cpep:111805867 448.358