Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00233 ATGGCTGGGTTCTTCTATCTAGGAGGAGGGAGAGAAGGCCCACCAAACAAACAAGAAGAAGAAGAAGAAAGAGAACAAAACTTGTTTATGTATAGAAATGAAGAGATCTACAACAAGGGTTTCGAGATATGGCCTCAACAATACACCAATCATCACCAGAATCCTTCTCTTACAGACCATTTATCCTTCGGCGTTGGTCCCAGCCGCCGCAGCTTCATGATCAACGACTCCGATGAGCCATCCAGATCAGCCTTCACCGTCATGCGCCCAGCCGCTGCCTTTGCCGCATCTGCGGCTGCCGCTGCCGCTGGTGGAGGCATGAATTGTCAAGACTGTGGCAACCAAGCGAAAAAGGACTGCGCTTATTTGCGGTGCAGGACTTGCTGTAAGAGCCGCGGCTTTCAGTGTCAGACCCATGTCAAAAGCACTTGGGTTCCGGCTGCTAAACGCCGTGAACGGCAGCAGCAAATTGCTGCTTTACAACAACAACAGCAACAAGAGCAGTTTCGTGGCGGAGAGAATTCTAAACGACAGAGAGAAACTCAGATTACCACCGCTGTCTCTGCCGCCACCGCCTCCGCCACCGCTTGCCCTCGTTTGCCCTCCATCACGTCAGGGTTAGAACTGGCGCAATTTCCATCAGAAGTGAACTCACCGGCGGTATTTCGGTGCGTAAAAGTAAGCGCAATGGACGATGCAGATGAAGAGTTTGCATATCAGACGGCTGTGAACATCGGTGGTCATGTGTTCAAAGGAATTCTCTACGATCAAGGTCCTGAAGTCCGTTACACCGCAGCCGGTGAGAGCTCCTCCGGCCTCGGCGGAGATGGATCAACACACCCACTTAACCTAATTGCCGGATCCTCCAACGCCGGACCCACTTCCGCATCTACCTCCGCCGCAACTAGTACCAACCCCTCCGCCGCCGCCGCCCCGTTGCTCGACCCTACGATATATCCAGCTCCTCTCAATGCATTCATGGCTGGTACGCAGTTCTTCCCACCCTCAAGGTCATGA 1017 53.2 MAGFFYLGGGREGPPNKQEEEEEREQNLFMYRNEEIYNKGFEIWPQQYTNHHQNPSLTDHLSFGVGPSRRSFMINDSDEPSRSAFTVMRPAAAFAASAAAAAAGGGMNCQDCGNQAKKDCAYLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQIAALQQQQQQEQFRGGENSKRQRETQITTAVSAATASATACPRLPSITSGLELAQFPSEVNSPAVFRCVKVSAMDDADEEFAYQTAVNIGGHVFKGILYDQGPEVRYTAAGESSSGLGGDGSTHPLNLIAGSSNAGPTSASTSAATSTNPSAAAAPLLDPTIYPAPLNAFMAGTQFFPPSRS 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1258703 1260421 - Cp4.1LG11g02260.1 Cpe11g00233 477027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00233 338 MobiDBLite consensus disorder prediction 265 307 - -
Cpe11g00233 338 PANTHER PROTEIN SHI RELATED SEQUENCE 7 1 335 - -
Cpe11g00233 338 Pfam Domain of unknown function (DUF702) 106 260 - -
Cpe11g00233 338 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 211 259 IPR006511 -
Cpe11g00233 338 MobiDBLite consensus disorder prediction 271 307 - -
Cpe11g00233 338 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 108 150 IPR006510 -
Cpe11g00233 338 MobiDBLite consensus disorder prediction 1 23 - -
Cpe11g00233 338 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 335 IPR007818 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe07g00386 Cpe11g00233 CCT
Cpe07g00386 Cpe11g00233 ECH
Cpe02g00098 Cpe11g00233 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00678 Cpe-Chr1:3961148 Cpe11g00233 Cpe-Chr11:1258703 1.24E-62 dispersed
Cpe11g00233 Cpe-Chr11:1258703 Cpe15g00256 Cpe-Chr15:2450606 3.87E-91 dispersed
Cpe10g00646 Cpe-Chr10:3722467 Cpe11g00233 Cpe-Chr11:1258703 3.24E-34 wgd
Cpe11g00233 Cpe-Chr11:1258703 Cpe19g00837 Cpe-Chr19:6224497 5.91E-72 wgd
Cpe11g00233 Cpe-Chr11:1258703 Cpe02g00098 Cpe-Chr2:491049 1.05E-92 wgd
Cpe11g00233 Cpe-Chr11:1258703 Cpe07g00386 Cpe-Chr7:2494578 3.48E-129 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50212 PF05142 DUF702 1.00E-67 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00233 - - cmo:103488016 503.827