Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00238 ATGTCGTCAACGTTTAGCGGTGATGAAACGGCACCCTTCTTTGGCTTCCTCGGCGCTGCTGCGGCCCTGGTTTTCTCCTGTATGGGAGCCGCTTACGGCACGGCGAAGAGCGGGGTTGGAGTGGCGTCAATGGGAGTGATGAGGCCGGAATTGGTGATGAAGTCGATTGTTCCGGTGGTTATGGCGGGAGTTTTGGGTATTTATGGTTTGATTATTGCTGTGATTATTAGTACGGGGATTAACCCGAAGGCTAAATCTTATTACCTCTTCGATGGTTACGCCCATCTCTCCTCTGGTCTTGCTTGCGGTCTCGCCGGTCTCTCTGCTGGCATGGCTATCGGCATCGTCGGCGATGCGGGCGTTAGGGCCAATGCACAACAACCAAAGCTCTTTGTTGGGATGATTCTCATTCTAATTTTTGCGGAAGCACTTGCCCTTTATGGACTTATTGTTGGTATTATTCTCTCATCCCGAGCTGGTCAGTCAAGAGCTGATTAA 498 51.0 MSSTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1288221 1290462 - Cp4.1LG11g02550.1 Cpe11g00238 477032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00238 165 SUPERFAMILY F1F0 ATP synthase subunit C 13 77 IPR035921 -
Cpe11g00238 165 SUPERFAMILY F1F0 ATP synthase subunit C 87 156 IPR035921 -
Cpe11g00238 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 30 54 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cpe11g00238 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 56 80 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cpe11g00238 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 107 133 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cpe11g00238 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 134 157 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cpe11g00238 165 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 3 165 - -
Cpe11g00238 165 TIGRFAM V_ATP_synt_C: V-type ATPase, C subunit 13 121 IPR011555 GO:0033179|GO:0046961|GO:1902600
Cpe11g00238 165 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 3 165 - -
Cpe11g00238 165 CDD ATP-synt_Vo_c_ATP6C_rpt2 89 156 - -
Cpe11g00238 165 CDD ATP-synt_Vo_c_ATP6C_rpt1 13 80 - -
Cpe11g00238 165 Gene3D - 11 162 IPR035921 -
Cpe11g00238 165 Pfam ATP synthase subunit C 97 155 IPR002379 GO:0015078|GO:0033177|GO:1902600
Cpe11g00238 165 Pfam ATP synthase subunit C 17 76 IPR002379 GO:0015078|GO:0033177|GO:1902600
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe07g00380 Cpe11g00238 CCT
Cpe07g00380 Cpe11g00238 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00380 Cpe-Chr7:2456073 Cpe11g00238 Cpe-Chr11:1288221 2.24E-81 dispersed
Cpe11g00238 Cpe-Chr11:1288221 Cpe11g00349 Cpe-Chr11:1892479 6.82E-22 dispersed
Cpe11g00238 Cpe-Chr11:1288221 Cpe07g00379 Cpe-Chr7:2450787 2.70E-113 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00238 K02155 - pvy:116145974 288.885