Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00239 ATGGACGGAGACAACAAGAAGTCTGGTTTTAGGAAAAGAACGAAGCCAAAGGAGGGTGGGTTTGATTCAGACGATGATGAACCCATTGGATCTTTGCTGAAGTTGAAGAGATCACGCAACTCTAAGAAGAGTAAGTTGGGTGTAGATGATGGTGGTGAAAGGGACAAGATGGTTGACAAGAAAGGAGCAAAACATCCAGAGCAAGAGGATATTGGGGGAATGGACGACACTTTAGCCAGTTTCAGAAAAAAGTTGAGGCGTCCTAAAGAGGTTGGACCCAGAATTGCTAGGAAACAGAGTTCTTCTGTAAGTGTGGCAGAATCTTTGGGTAATGCATCCAGAGGACAAGGGGATTTAGACGCAAGATTTAGACCAGAAAAGGGTGAATTAATGGACCGTGAAGAGTTTGATTCATCTGCAATGATTGATGTAGAAACGAGGCGTGAAGCACCTGTTTTGGAATTAAAAGACATGGAGACGGGTATCTCGAGTCGGAGAAGTGCTAAGTTTGATGATTCACTGTCAGCATTTGTCCAAAAGGTTCAATCTAGTTCAACTAGGAAAACATTCATATCTACAACATTTAAACCGGATTGCAAGGACGAGGCTTCAGAAGATAAATTGAGTCCTTTTTCTAGAACTGGGGATCATGAAACATACTCCATAGTGAGTTCTGATTCTTCTGCTAAGCTGGCACAAGTTGTAGAAAAAACAGATTCTGATCTTACTATGTCATGTTTAATTTCCTGTTCATGGTGCACTGGAGAGAATTGTAATCCTAATCCCGATCAAGGACAATGCCACCAAGGGGTCGAAGGTGACCAAGAAGAGTATCAACGTCGTCTCAATAATCAAGATAGCAAAAACTATAGTCAATTTAGGGACAATTTCCAGGGGCTGGAAAGAAAGGCATCATGTGAAATCAAGAATGCATTAAAACATTGTTCTTGTGGCGAAACAATGGAGCGTAGCCATTTGGCAGAAATGGTTTCTCTTCAGGATGGGCGAGGTGAAAATCATCTTAATGAAAATATGTGCAGTTCTTTTCGCCCTCTAGAACAGTCAAAAGAAAACCATGGCCTTTGTGGGGGTGTTTCCAGCGGATATTTTTGTGATGTGGTGGCCCAAGAGACCACAGTTAGTTTGTCTAAAAAAACTTTAGGTGTAGATTGTGAAGGAAAAGATAGATTACTTGTTATACATCATGATGAATTGCCTACCTCTACCAACTTCTGTGAAAGTTCTTCCAAAGAAATCTGTAGATCTACTCAAAATTTGAAGATTTCTGATCAATCATTAGACAGAACAACACTCTCCAATCTTCAGATATCCGCAGCTTTCGATTCAACGGAAGTGGATAAGACTTGCTGTGACTCCGAAAATTTAAATACTGGAACTGATGTGCCAAATACCAAAGGTGGTTCTAGGCAGAAGGAAAATGCTCTGATCTCTCGGAGGATTTCAGATACAACTGCTGTTCAATGTTCCAGATCCCAAAAATCTGTGGCAGCTACATCCGTACCAAATTATCCAGAAGTTTGTCCTATTGGAAATTTCAGCATGATATCAGATAATCAACTGGTCAAGGCTTCCGTAGTGATAGATGGTCCAAATAATATACTTCCTGGTAAGGACGTTAAGGTATCTTCTCCTGGGTCTTTGACTCCAGACGATAATGACCTTGAGGATGTAGTATCTGCTCCTGGTAGTGAAAAAGATTTAAAGCTTTCAGCTTTACAACGTGTAGCGTGCAAGACAAAGAAGCCCAGACATGATGACATGGCTTACGAAGGAGATATTGATTGGGAGATTTTGATTAGTGAGCGTGTAGTTGATGGTGACCATTCTTTTAGATCAAGAAGGGATTCTACATCAACAACTTTTACTGAAGCTGAAACTGGTGGTAGAGCTGCAGTATCTGCAGGGCTGAAGGCTCATGCAGTTAATCTACTTGAGAAGATTAAATTTAAGGATGTGCTAAAGCGCAAAGGTGGGCTTCAAGAGTACTTGGCATGCAGGAATCAGATCTTGGGCCTTTGGAGTAAAGATGTTACACGCATTTTGAATCTTGTTGACTGTGGGGTCACTAATACTCCCTCTATGGATGAACCACCACGTTTCCCCCTTATTAGGGAGATCTATGCATTTCTTAATCTACGTGGTTATATAAATGCGGGGATTGCTTCTGAGAAAGTTAAATCAGAATCTGATATTAAGTATGAATATGAGCTGGGAGAAAAGAAAGTTGGAGAGGTTACTGTTGCTTCAGCTGCTGATTCTGAGGAAGGGGTTTGTGTCATTGTTAAAAATTCTGATGCTTCGGATGCAGAGAACAATGTTGCAGTTGGCTGTGAACTACTATTGGAAGACACTGAAGGAAGAGATCTTGTGATTGAAAATAATTTTGAGTTAGCAAAACCAGTGGAACATGAACAAGAATTGGTTCAGGACTTGGAGTACGGTACTCTTGATCCTATACCGGTAAAATCTGTAGGTATTGATGTTCCAGGTAAAGCTGCCTCACATTTAACTAACCAGTCAAGAAATGGTCGGCACCAAATCCAGTCCTCCGATGCGTGTGTCGGAGGTGATCAACAACAGCAGAGTAATTCTGAAGTCAGAAAGAAAGTAATTGTTATTGGAGCTGGTCCTGCTGGCTTAACTGCTGCCAAGCACTTGCATCGTCAGGGCTTTACTGTCATTGTACTTGAAGCTAGGAATAGGTTAGGAGGTCGTGTTTATACAGATCGCTCCTCTCTTTCTGTTCCTGTAGATCTTGGTGCAAGTATTATTACAGGAGTAGAGGCTGATGTCGCAACTGAAAGAAGACCCGATCCATCTTCATTGATTTGCACTCAATTGGGTCTTGAGTTGACTGTATTAAATAGTGACTGTCCACTCTATGATATCATTACATGCAAAAAAGTTCCGGTAGACATGGACGAAGCTTTGGAAGCAGAATATAATAGTCTTCTTGATGACATGGTGTTGCTTGTTGCACAAAGAGGAGAGCACGCAATGGCCATGTCTCTTGAGGAGGGTTTAGAATATGCCCTTAAGCGACGGCGCATGGCTCGATTGGGAATAGATGCTTGTTCTGAGAAAGAGCTTTTGAGTCCCTTTGAGAGGCGAGTTATGAATTGGCATTTTGCTAACTTGGAGTATGGTTGTGCTGCTATGCTCAAGAAAGTATCTCTTCCTAATTGGAATCAGGACGATCTTTATGGAGGTTTTGGAGGAGCTCATTGTATGATTAAAGGGGGTTATAGCACTGTTGTTGAGTCTCTTGGTGGAGGACTCAATGTTCACCTAAATCATGCTGTGGCTGATATTTCTTACAGCACCAATGACATTGAGTTAAACGAGAATCAGTGTGCAAAGGTAAAAGTTTCCACAACCAATGGCTCTGTGTTCCTAGGAGATGCTGTCCTTATTACCGTGCCTCTTGGGTGCTTGAAAGAAGAAACTATTAAGTTTTCCCCACCATTGCCTGAATGGAAGCGTCTGTCCATCCAGCGCCTTGGATTTGGAGTTCTTAACAAAATAGTTCTTGAATTTCCAGAAGTTTTCTGGGATGACTCTGTGGATTATTTTGGGGCAACTGCAGAGGAAACAAAGTGGAGGGGGCAGTGTTTCATGTTTTGGAATGTAAGAAAAACAGTTGGTGCTCCTGTTCTCATGGCATTAGTGGTTGGTCAGGCGGCTGTGGAAAGGCAATATATGAGCTCTTCTGATAACGTAAGCCATGCATTAATGGTCCTTCGAAAACTTTTTGGAGAAGCTATGGTGCCTGATCCAGTTGCAACTGTAGTGACTGATTGGGGACGAGATCCGTTTAGCTATGGTGCTTACTCTTATGTTGCTGTTGGAGCGTCGGGAGAGGATTATGACATTTTAGCGAGGCCTGTTGGAAACTGTTTGTTTTTTGCTGGTGAAGCTACATGCAAGGAGCATCCTGACACCGTTGGGGGTGCAATGATGAGTGGGCTAAGAGAGGCTGTACGCATGATTGATATATTGAGTTATGGTTATGATTTTACAGCAGAAGTAGAGGCAATGGAAGCTGCTCAGAGGCAGTCTGATTGTGAGAATGATGAAGTTGGAGACATAATTACAAGACTTGATGCTGTTAAGCTTTCTGATGCTCTTTTCAAAAATTCTTTGGATGGATCTAGGATTGTGACCAGAGAAGCTTTACTAAAAGACTTGTTTTTTAGTGCAAAAACAACAGCAGGGAGATTGCATGTGGCAAAAGAGTTGCTGAATATCCCTGTTGAGACGTTAAAGTCTTTTGCAGGGGCTAAAGAAGGCCTTACAGTTCTCAACTCGTGGATATTGGACTCAATGGGGAAGGATGGGACTCAACTTCTTCGGCAGTGTGTTCGTATTCTTGTGCTAGTTTCAACTGATCTACTTGCAGTTCGCTTATCAGGCATAGGTAAAACTGTCAAAGAAAAGGTATGTGTGCATACAAGCCGTGACATTCGTGCCATTGCAAGTCAGTTGGTTAGCATTTGGCTTGAAGTTTTCCGTAAAGAAAAGGCTGCTAATGGGGGGTTAAAACTCTCAAAGTCAGTTTCTACTGTAGAATCATTGAAGAGGAAATCTAATAAAGATTCTTCTTCTGGAAAACCTCCTTTGCACTCAAACAACTGCGCGCTGGATAGTAGAGGCAATTTGCCAACTTCTGCATCAGCTGCAATTCCCTCAACGTCTGATGTCAATATGAAAAGTGATAATAGTAAATTGAAATTGGAAATGGAAAATTCATCAAAATCAGATATCAGTTCATCAAGGTCAAGGGGTTCATTTGGAAAGCAGGATGCAGAGATGGAAGACAACAACATTGTGATGACAGAAGAAGAGGAGACTGCCTTTGCTGCTGCTGAGGCAGCACGTGCTGCAGCACTTGCAGCTGCGAAGGCATATGCATCTTCTGAAGCCAAGAGTGCGATGCAGCTCCCAAAAATCCCTTCCTTTCACAAATTTGCCAGAAGGGAGCATTATGCTCAAATGGATGAGTACGAGTATAAAAGGAAGTTGTCTGGCAGTGTGCTAGGAAGACAAGATTGTACTTCAGAAATAGATTCAAGGAATTGCAGGGTCAGGAACTGGTCTGTGGAATTTTCTGCTGCTTGTGTTAATCTTGAAAGTTCACGAATGTCTGCAGATAACCTTTCGCAAAGAAGCCATTCAAATGAGATTGTTAGCCAATTAAACTTCAGGGAACACTCTGGTGAAAGTGTTCCTATGGATAGTAGTATATACACGAAAGCATGGGTCGATACAGCTGGTAGTGTTGGAATGAAAGATTATCATGCAATTGAGAGATGGCGGACTCAAGCAGCTGCAGCTCATGTAGATGATGAGGAGGATTCAAACACAAATTGGAACAACCCCACTTGGAATAGTGATCAAGTAGCGAATGAGAGCTCAATATCACAAGTGACGATCAGCAAGGAGCCAATAAGAAACCATCAACATGGGGCTGACAGAATTAAGCAGGCTGTAGTTGATTATGTTGCATCACTCTTGATGCCCCTTTACAAAGCAAGGAAAATTGACAAGGATGGATATAAGTCAATTATGAAGAAAAGTGCAACCAAGGTCATGGAACAAGCCACTGATGCAGAGAAAGGCATGACTGTTTCTGAGTTTCTTGATTTCAAACACAGGTCCTTATCTGTTTCCTCTTGGTTGCACTTGGATTATGCACTTGCAGATTCGTGCCTTTGTAGACAAATTAATAGAGAGGCATATGGCCACGAAGCCAGTGATGAAATCGTGACAGTCCCAAGGATTTGTTGTCATTTCTTGGTCAATAATGAAGTCATGATGGTCCCAAGGATCAAGTGGCTTGATTGGCGAGCTCTCGAGGACACACTTGGATTATTCATTTTAGCCTGGAAAGACTCCAAGTTGTGGAGTTTCATTGATCTACCAAGATTTTGGTTCGTGCTGTCAGATATGATTATAATTGGTCCTGGTGCTAAATGTGATTATGATTGA 6009 41.95 MDGDNKKSGFRKRTKPKEGGFDSDDDEPIGSLLKLKRSRNSKKSKLGVDDGGERDKMVDKKGAKHPEQEDIGGMDDTLASFRKKLRRPKEVGPRIARKQSSSVSVAESLGNASRGQGDLDARFRPEKGELMDREEFDSSAMIDVETRREAPVLELKDMETGISSRRSAKFDDSLSAFVQKVQSSSTRKTFISTTFKPDCKDEASEDKLSPFSRTGDHETYSIVSSDSSAKLAQVVEKTDSDLTMSCLISCSWCTGENCNPNPDQGQCHQGVEGDQEEYQRRLNNQDSKNYSQFRDNFQGLERKASCEIKNALKHCSCGETMERSHLAEMVSLQDGRGENHLNENMCSSFRPLEQSKENHGLCGGVSSGYFCDVVAQETTVSLSKKTLGVDCEGKDRLLVIHHDELPTSTNFCESSSKEICRSTQNLKISDQSLDRTTLSNLQISAAFDSTEVDKTCCDSENLNTGTDVPNTKGGSRQKENALISRRISDTTAVQCSRSQKSVAATSVPNYPEVCPIGNFSMISDNQLVKASVVIDGPNNILPGKDVKVSSPGSLTPDDNDLEDVVSAPGSEKDLKLSALQRVACKTKKPRHDDMAYEGDIDWEILISERVVDGDHSFRSRRDSTSTTFTEAETGGRAAVSAGLKAHAVNLLEKIKFKDVLKRKGGLQEYLACRNQILGLWSKDVTRILNLVDCGVTNTPSMDEPPRFPLIREIYAFLNLRGYINAGIASEKVKSESDIKYEYELGEKKVGEVTVASAADSEEGVCVIVKNSDASDAENNVAVGCELLLEDTEGRDLVIENNFELAKPVEHEQELVQDLEYGTLDPIPVKSVGIDVPGKAASHLTNQSRNGRHQIQSSDACVGGDQQQQSNSEVRKKVIVIGAGPAGLTAAKHLHRQGFTVIVLEARNRLGGRVYTDRSSLSVPVDLGASIITGVEADVATERRPDPSSLICTQLGLELTVLNSDCPLYDIITCKKVPVDMDEALEAEYNSLLDDMVLLVAQRGEHAMAMSLEEGLEYALKRRRMARLGIDACSEKELLSPFERRVMNWHFANLEYGCAAMLKKVSLPNWNQDDLYGGFGGAHCMIKGGYSTVVESLGGGLNVHLNHAVADISYSTNDIELNENQCAKVKVSTTNGSVFLGDAVLITVPLGCLKEETIKFSPPLPEWKRLSIQRLGFGVLNKIVLEFPEVFWDDSVDYFGATAEETKWRGQCFMFWNVRKTVGAPVLMALVVGQAAVERQYMSSSDNVSHALMVLRKLFGEAMVPDPVATVVTDWGRDPFSYGAYSYVAVGASGEDYDILARPVGNCLFFAGEATCKEHPDTVGGAMMSGLREAVRMIDILSYGYDFTAEVEAMEAAQRQSDCENDEVGDIITRLDAVKLSDALFKNSLDGSRIVTREALLKDLFFSAKTTAGRLHVAKELLNIPVETLKSFAGAKEGLTVLNSWILDSMGKDGTQLLRQCVRILVLVSTDLLAVRLSGIGKTVKEKVCVHTSRDIRAIASQLVSIWLEVFRKEKAANGGLKLSKSVSTVESLKRKSNKDSSSGKPPLHSNNCALDSRGNLPTSASAAIPSTSDVNMKSDNSKLKLEMENSSKSDISSSRSRGSFGKQDAEMEDNNIVMTEEEETAFAAAEAARAAALAAAKAYASSEAKSAMQLPKIPSFHKFARREHYAQMDEYEYKRKLSGSVLGRQDCTSEIDSRNCRVRNWSVEFSAACVNLESSRMSADNLSQRSHSNEIVSQLNFREHSGESVPMDSSIYTKAWVDTAGSVGMKDYHAIERWRTQAAAAHVDDEEDSNTNWNNPTWNSDQVANESSISQVTISKEPIRNHQHGADRIKQAVVDYVASLLMPLYKARKIDKDGYKSIMKKSATKVMEQATDAEKGMTVSEFLDFKHRSLSVSSWLHLDYALADSCLCRQINREAYGHEASDEIVTVPRICCHFLVNNEVMMVPRIKWLDWRALEDTLGLFILAWKDSKLWSFIDLPRFWFVLSDMIIIGPGAKCDYD 2002
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1291643 1304046 - Cp4.1LG11g02530.1 Cpe11g00239 477033

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00239 2002 PANTHER FLAVIN MONOAMINE OXIDASE 572 1892 - -
Cpe11g00239 2002 MobiDBLite consensus disorder prediction 97 111 - -
Cpe11g00239 2002 Gene3D - 964 1292 - -
Cpe11g00239 2002 SUPERFAMILY FAD-linked reductases, C-terminal domain 1175 1286 - -
Cpe11g00239 2002 MobiDBLite consensus disorder prediction 42 86 - -
Cpe11g00239 2002 ProSiteProfiles SWIRM domain profile. 634 734 IPR007526 GO:0005515
Cpe11g00239 2002 MobiDBLite consensus disorder prediction 841 868 - -
Cpe11g00239 2002 PANTHER LYSINE-SPECIFIC HISTONE DEMETHYLASE 1 HOMOLOG 3 572 1892 - -
Cpe11g00239 2002 MobiDBLite consensus disorder prediction 1 33 - -
Cpe11g00239 2002 Pfam SWIRM domain 644 724 IPR007526 GO:0005515
Cpe11g00239 2002 Pfam Flavin containing amine oxidoreductase 885 1337 IPR002937 GO:0016491
Cpe11g00239 2002 SUPERFAMILY FAD/NAD(P)-binding domain 874 1339 IPR036188 -
Cpe11g00239 2002 MobiDBLite consensus disorder prediction 1 127 - -
Cpe11g00239 2002 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 1435 1519 IPR035441 -
Cpe11g00239 2002 SUPERFAMILY Homeodomain-like 636 730 IPR009057 -
Cpe11g00239 2002 Gene3D - 634 737 IPR036388 -
Cpe11g00239 2002 MobiDBLite consensus disorder prediction 1590 1604 - -
Cpe11g00239 2002 MobiDBLite consensus disorder prediction 1531 1610 - -
Cpe11g00239 2002 Gene3D - 877 1335 IPR036188 -
Cpe11g00239 2002 MobiDBLite consensus disorder prediction 1542 1578 - -
Cpe11g00239 2002 MobiDBLite consensus disorder prediction 1784 1805 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00239 - - - bhj:120075972 3148.22
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe07g00378 Cpe11g00239 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00608 Cpe-Chr2:3673857 Cpe11g00239 Cpe-Chr11:1291643 3.58E-68 dispersed
Cpe06g00714 Cpe-Chr6:4437134 Cpe11g00239 Cpe-Chr11:1291643 1.89E-95 dispersed
Cpe11g00239 Cpe-Chr11:1291643 Cpe13g00758 Cpe-Chr13:6947779 8.63E-92 dispersed
Cpe11g01171 Cpe-Chr11:9627568 Cpe11g00239 Cpe-Chr11:1291643 2.84E-27 transposed
Cpe11g00239 Cpe-Chr11:1291643 Cpe07g00378 Cpe-Chr7:2440761 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1052 Blo01g01586 . . . Bpe02g00363 . Bma04g00234 . Cmo05g00295 Cmo12g00373 . . . Car12g00399 . . Cpe07g00378 Bhi04g00235 . . . Hepe10g0131 . . . . . . . . . Cone4ag1951 Cone7ag1863 . . . . . . . . . . . . . . . . . Cma12g00423 Cma05g00288 Car05g00239 . Cpe11g00239 . . . . . . . . . . . . . . . Lsi08g01341 Csa02g02114 Chy03g01402 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004381 1 2 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50214 PF01593 Amino_oxidase 6.90E-101 CL0063 Cpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe11g00239 Cpe_Chr11 FPKM 8.905373 10.955959 15.304439 14.296241 10.745874 10.133145 13.267259 5.584005 5.917606 6.312078